Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_L08
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25D12.04 |suc22||ribonucleotide reductase small subunit Suc2...   180   2e-46
SPCC63.06 |||human WDR89 family WD repeat protein|Schizosaccharo...    27   3.1  
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc...    25   9.5  
SPAC607.04 |||inositol polyphosphate kinase |Schizosaccharomyces...    25   9.5  

>SPBC25D12.04 |suc22||ribonucleotide reductase small subunit Suc22
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 391

 Score =  180 bits (437), Expect = 2e-46
 Identities = 87/144 (60%), Positives = 105/144 (72%), Gaps = 1/144 (0%)
 Frame = +3

Query: 219 LDKNFEEFDPQKEPLLRENPRRFVIFPIQYPDIWQMYKKAEASFWTVEEVDLSXDLSXWE 398
           L K  +E D   E +LR NP RFV+FPI+Y +IWQ YKKAEASFWT EE+DLS DL  W+
Sbjct: 57  LGKKEDELD---EVVLRPNPHRFVLFPIKYHEIWQFYKKAEASFWTAEEIDLSKDLVDWD 113

Query: 399 T-LKDSERHFIKHVLAFFAASDGIVNENLVXRFSQEVQVTEARCFYGFXIAMENVHSEMY 575
             L   ER+FI  VLA+FAASDGIVNENL+ RFS EVQ+ EARC YGF I +EN+HSE Y
Sbjct: 114 NKLNADERYFISTVLAYFAASDGIVNENLLERFSSEVQIPEARCVYGFQIMIENIHSETY 173

Query: 576 SLLIXTYIXXPXXRDFLFNAVXTL 647
           SLL+ TYI  P  +   F+A+ T+
Sbjct: 174 SLLLDTYIREPKEKQRHFDAILTM 197


>SPCC63.06 |||human WDR89 family WD repeat
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 331

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +3

Query: 162 PMKNSVLATKN-DNLTEEMDLDKNFEEFDPQKEPLL 266
           P  N +L T + D L   +D  K  +  DP+++PLL
Sbjct: 156 PKDNELLLTGSVDGLVSLLDTTKEEDSTDPEEDPLL 191


>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 735

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 108 KENLHSGINGENRVQTKSPMKNSVLATKNDNLTE 209
           ++ LH  IN +N  Q++S      ++   DNL E
Sbjct: 527 EDELHEAINSKNVQQSRSEELEQQISKLTDNLQE 560


>SPAC607.04 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 268

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +3

Query: 129 INGENRVQTKSPMKNSV--LATKNDNLTEEMDLDKNFEEFDPQKEPLLRENP 278
           ++ ++++  K  +K+ V    T NDN+T    + KNF E+ P    +   NP
Sbjct: 18  VSEDDKILIKPCIKSEVDFYKTCNDNITLYNWIPKNFGEWMPSSRDIEGINP 69


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,452,694
Number of Sequences: 5004
Number of extensions: 48253
Number of successful extensions: 125
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)