Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_L08
         (652 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32960| Best HMM Match : Ribonuc_red_sm (HMM E-Value=0)             202   1e-52
SB_9251| Best HMM Match : Ribonuc_red_sm (HMM E-Value=0)              199   2e-51
SB_18028| Best HMM Match : Ribonuc_red_sm (HMM E-Value=1e-13)          69   4e-12
SB_12957| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_43863| Best HMM Match : FLO_LFY (HMM E-Value=1.5)                   29   4.3  
SB_36598| Best HMM Match : E-MAP-115 (HMM E-Value=0.092)               28   5.7  

>SB_32960| Best HMM Match : Ribonuc_red_sm (HMM E-Value=0)
          Length = 991

 Score =  202 bits (494), Expect = 1e-52
 Identities = 95/137 (69%), Positives = 107/137 (78%)
 Frame = +3

Query: 240 FDPQKEPLLRENPRRFVIFPIQYPDIWQMYKKAEASFWTVEEVDLSXDLSXWETLKDSER 419
           F+ + EPLLRENP RFVI PIQYP+IWQMYKKAEASFWT EEVDLS D   +  L D ER
Sbjct: 60  FNTEDEPLLRENPHRFVILPIQYPEIWQMYKKAEASFWTAEEVDLSKDSHDFAKLNDDER 119

Query: 420 HFIKHVLAFFAASDGIVNENLVXRFSQEVQVTEARCFYGFXIAMENVHSEMYSLLIXTYI 599
            F+ HVLAFFAASDGIVNENLV  F QEVQ+ EARCFYGF IA+EN+HSEMYSLLI + I
Sbjct: 120 MFVSHVLAFFAASDGIVNENLVECFCQEVQIPEARCFYGFQIAIENIHSEMYSLLIESLI 179

Query: 600 XXPXXRDFLFNAVXTLP 650
                +  LFNA+ T+P
Sbjct: 180 KDKAEKVNLFNAIETMP 196


>SB_9251| Best HMM Match : Ribonuc_red_sm (HMM E-Value=0)
          Length = 928

 Score =  199 bits (485), Expect = 2e-51
 Identities = 94/137 (68%), Positives = 106/137 (77%)
 Frame = +3

Query: 240 FDPQKEPLLRENPRRFVIFPIQYPDIWQMYKKAEASFWTVEEVDLSXDLSXWETLKDSER 419
           F+ + EPLLRENP RFVI PIQY +IWQMYKKAEASFWT EEVDLS D   +  L D ER
Sbjct: 77  FNTEDEPLLRENPHRFVILPIQYTEIWQMYKKAEASFWTAEEVDLSKDSHDFAKLNDHER 136

Query: 420 HFIKHVLAFFAASDGIVNENLVXRFSQEVQVTEARCFYGFXIAMENVHSEMYSLLIXTYI 599
            F+ HVLAFFAASDGIVNENLV  F QEVQ+ EARCFYGF IA+EN+HSEMYSLLI + I
Sbjct: 137 MFVSHVLAFFAASDGIVNENLVECFCQEVQIPEARCFYGFQIAIENIHSEMYSLLIESLI 196

Query: 600 XXPXXRDFLFNAVXTLP 650
                +  LFNA+ T+P
Sbjct: 197 KDKAEKVNLFNAIETMP 213


>SB_18028| Best HMM Match : Ribonuc_red_sm (HMM E-Value=1e-13)
          Length = 241

 Score = 68.5 bits (160), Expect = 4e-12
 Identities = 29/36 (80%), Positives = 32/36 (88%)
 Frame = +3

Query: 240 FDPQKEPLLRENPRRFVIFPIQYPDIWQMYKKAEAS 347
           F+ + EPLLRENP RFVI PIQYP+IWQMYKKAEAS
Sbjct: 60  FNTEDEPLLRENPHRFVILPIQYPEIWQMYKKAEAS 95


>SB_12957| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 149

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = -2

Query: 576 NTFQNEHFPWLXGSHRNILPQ*LELLVKIXQPSFHLQCHLKPQRKQGHA 430
           NT     FP L  S +  LPQ     ++    +F LQ HL+P ++QG++
Sbjct: 33  NTLDPSIFPLLYQSPKKDLPQ---FPIRTVPGAFCLQYHLRPLKQQGYS 78


>SB_43863| Best HMM Match : FLO_LFY (HMM E-Value=1.5)
          Length = 592

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = +3

Query: 126 GINGENRVQTKSPMKNSVLATKNDNLTEEMDLDKNFEE 239
           G  GE+  +TKS  K+     K+    EE DLDKN  E
Sbjct: 386 GKRGESVGKTKSKDKDKESREKDKEKKEERDLDKNSSE 423


>SB_36598| Best HMM Match : E-MAP-115 (HMM E-Value=0.092)
          Length = 783

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +3

Query: 120 HSGINGENRVQTKSPMKNSVLATKNDNLTEEMDLDKNFEEFD 245
           HSG+  EN + +    + S     ND  TE +  D   E FD
Sbjct: 108 HSGLTSENDISSPRKKRKSSHGATNDRATENLLRDLPPEAFD 149


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,895,189
Number of Sequences: 59808
Number of extensions: 351792
Number of successful extensions: 933
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 933
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)