Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P03_F_L08
(652 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g27060.1 68416.m03385 ribonucleoside-diphosphate reductase sm... 195 2e-50
At3g23580.1 68416.m02966 ribonucleoside-diphosphate reductase sm... 194 6e-50
At5g40942.1 68418.m04973 ribonucleoside-diphosphate reductase sm... 163 1e-40
At1g51405.1 68414.m05786 myosin-related low similarity to nonmus... 32 0.29
At5g04640.1 68418.m00470 MADS-box family protein SLM3 MADS-box p... 30 1.5
At4g31880.1 68417.m04531 expressed protein 29 2.0
At5g46500.1 68418.m05726 expressed protein 29 3.5
At1g74390.1 68414.m08618 exonuclease family protein contains exo... 29 3.5
At5g51820.1 68418.m06425 phosphoglucomutase, chloroplast (PGM) (... 28 4.7
At4g22200.1 68417.m03209 potassium channel protein 2 (AKT2) (AKT... 28 6.2
>At3g27060.1 68416.m03385 ribonucleoside-diphosphate reductase small
chain, putative / ribonucleotide reductase, putative
similar to ribonucleotide reductase R2 [Nicotiana
tabacum] GI:1044912; contains Pfam profile PF00268:
Ribonucleotide reductase, small chain
Length = 332
Score = 195 bits (475), Expect = 2e-50
Identities = 92/134 (68%), Positives = 103/134 (76%), Gaps = 1/134 (0%)
Frame = +3
Query: 252 KEPLLRENPRRFVIFPIQYPDIWQMYKKAEASFWTVEEVDLSXDLSXWE-TLKDSERHFI 428
+EPLL P RF +FPI YP IW+MYKKAEASFWT EEVDLS D WE +L D ERHFI
Sbjct: 6 EEPLLTPTPDRFCMFPIHYPQIWEMYKKAEASFWTAEEVDLSQDNRDWENSLNDGERHFI 65
Query: 429 KHVLAFFAASDGIVNENLVXRFSQEVQVTEARCFYGFXIAMENVHSEMYSLLIXTYIXXP 608
KHVLAFFAASDGIV ENL RF +VQV+EAR FYGF IA+EN+HSEMYSLL+ TYI
Sbjct: 66 KHVLAFFAASDGIVLENLASRFMSDVQVSEARAFYGFQIAIENIHSEMYSLLLDTYIKDN 125
Query: 609 XXRDFLFNAVXTLP 650
RD LF A+ T+P
Sbjct: 126 KERDHLFRAIETIP 139
>At3g23580.1 68416.m02966 ribonucleoside-diphosphate reductase small
chain / ribonucleotide reductase nearly identical to
SP|P50651 Ribonucleoside-diphosphate reductase small
chain (EC 1.17.4.1) (Ribonucleotide reductase) (R2
subunit) {Arabidopsis thaliana}
Length = 341
Score = 194 bits (472), Expect = 6e-50
Identities = 90/142 (63%), Positives = 108/142 (76%)
Frame = +3
Query: 225 KNFEEFDPQKEPLLRENPRRFVIFPIQYPDIWQMYKKAEASFWTVEEVDLSXDLSXWETL 404
++ EE + + EPLL +RF +FPI+Y IW+MYKKAEASFWT EEVDLS D+ WE L
Sbjct: 10 RDMEEGESE-EPLLMAQNQRFTMFPIRYKSIWEMYKKAEASFWTAEEVDLSTDVQQWEAL 68
Query: 405 KDSERHFIKHVLAFFAASDGIVNENLVXRFSQEVQVTEARCFYGFXIAMENVHSEMYSLL 584
DSE+HFI H+LAFFAASDGIV ENL RF +VQV EAR FYGF IAMEN+HSEMYSLL
Sbjct: 69 TDSEKHFISHILAFFAASDGIVLENLAARFLNDVQVPEARAFYGFQIAMENIHSEMYSLL 128
Query: 585 IXTYIXXPXXRDFLFNAVXTLP 650
+ T+I +D LFNA+ T+P
Sbjct: 129 LETFIKDSKEKDRLFNAIETIP 150
>At5g40942.1 68418.m04973 ribonucleoside-diphosphate reductase small
chain, putative / ribonucleotide reductase, putative
similar to ribonucleotide reductase R2 [Nicotiana
tabacum] GI:1044912; contains Pfam profile PF00268:
Ribonucleotide reductase, small chain
Length = 231
Score = 163 bits (395), Expect = 1e-40
Identities = 75/108 (69%), Positives = 87/108 (80%), Gaps = 1/108 (0%)
Frame = +3
Query: 252 KEPLLRENPRRFVIFPIQYPDIWQMYKKAEASFWTVEEVDLSXDLSXWE-TLKDSERHFI 428
+EP+L P RF +FPIQYP IW+MYKKAEASFWT EEVDLS D WE +L + ERHFI
Sbjct: 6 EEPILTPTPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDNRDWENSLTNDERHFI 65
Query: 429 KHVLAFFAASDGIVNENLVXRFSQEVQVTEARCFYGFXIAMENVHSEM 572
KHVLAFFAASDGIV ENL RF +VQ++EAR FYGF IA+EN+HSE+
Sbjct: 66 KHVLAFFAASDGIVLENLSTRFMSDVQISEARAFYGFQIAIENIHSEI 113
>At1g51405.1 68414.m05786 myosin-related low similarity to nonmuscle
myosin heavy chain from Gallus gallus [GI:212449],
Xenopus laevis [GI:214624], Homo sapiens [GI:641958]
Length = 487
Score = 32.3 bits (70), Expect = 0.29
Identities = 18/61 (29%), Positives = 30/61 (49%)
Frame = +3
Query: 111 ENLHSGINGENRVQTKSPMKNSVLATKNDNLTEEMDLDKNFEEFDPQKEPLLRENPRRFV 290
+NLHS + G R S K L + L EE+ + ++ +P+K L E+ +R +
Sbjct: 375 QNLHSSVEGWRRKALSSEAKLKNLQAEVCGLQEEIKRLRKEDKLEPEKNKLPSESEKRVL 434
Query: 291 I 293
I
Sbjct: 435 I 435
>At5g04640.1 68418.m00470 MADS-box family protein SLM3 MADS-box
protein, S.latifolia, EMBL:SLSLM3
Length = 322
Score = 29.9 bits (64), Expect = 1.5
Identities = 17/64 (26%), Positives = 31/64 (48%)
Frame = +3
Query: 78 RQ*TMAPTVDKENLHSGINGENRVQTKSPMKNSVLATKNDNLTEEMDLDKNFEEFDPQKE 257
R+ + +D++N+H + KN+VL D +E+DLD+ +F+ E
Sbjct: 209 RELVVHKNMDEDNIHVSDMDDKDTMLMISDKNNVLPENLDEFDQELDLDQ-LLDFETNYE 267
Query: 258 PLLR 269
LL+
Sbjct: 268 SLLK 271
>At4g31880.1 68417.m04531 expressed protein
Length = 873
Score = 29.5 bits (63), Expect = 2.0
Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 2/97 (2%)
Frame = +3
Query: 156 KSPMKNSVLATKNDNLTEEMDLDKNFEEFDPQKEPLLRENPRRFVIFPI--QYPDIWQMY 329
KS + N V A +ND+ + + D K ++ + EP +NPR + + PD+
Sbjct: 302 KSGVSNGV-AQQNDS-SVDTDSMKKQDDTGAKDEPQQLDNPRNTDLNNTTEEKPDVEHQI 359
Query: 330 KKAEASFWTVEEVDLSXDLSXWETLKDSERHFIKHVL 440
++ E +V++ DLS D E + +E K VL
Sbjct: 360 EEKENESSSVKQADLSKDSDIKEETEPAELLDSKDVL 396
>At5g46500.1 68418.m05726 expressed protein
Length = 417
Score = 28.7 bits (61), Expect = 3.5
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Frame = +3
Query: 120 HSGINGENRVQTKSPMKNSVLATKNDNL---TEEMDLDKNFEEF 242
H+G +G+N V+T+ K++ D++ E+MD D + EE+
Sbjct: 277 HNGESGDNNVETERSTKHAAQRNYYDHVDIDIEQMDSDDDIEEW 320
>At1g74390.1 68414.m08618 exonuclease family protein contains
exonuclease domain, Pfam:PF00929
Length = 506
Score = 28.7 bits (61), Expect = 3.5
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = +1
Query: 277 RGALSSSLFN--TPIYGKCTRKLKLRFGPSRKSI 372
RG+L LF+ TP++ C LK+RFG SRK +
Sbjct: 334 RGSLRMKLFHNDTPLH-LCWHSLKVRFGISRKFV 366
>At5g51820.1 68418.m06425 phosphoglucomutase, chloroplast (PGM)
(PGMP) / glucose phosphomutase identical to SP|Q9SCY0
Phosphoglucomutase, chloroplast precursor (EC 5.4.2.2)
(Glucose phosphomutase) (PGM) {Arabidopsis thaliana}
Length = 623
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -1
Query: 181 NTLFFMGDFVCTRFSPLIPL*RFSLSTVG 95
+T+F F ++SPL+P F+LST G
Sbjct: 9 DTVFLFSRFAGAKYSPLLPSPSFTLSTSG 37
>At4g22200.1 68417.m03209 potassium channel protein 2 (AKT2) (AKT3)
identical to potassium channel [Arabidopsis thaliana]
gi|1100898|gb|AAA97865; Note: also identical to AKT3
[Arabidopsis thaliana] gi|1172218|gb|AAA96153, which is
a truncated version of AKT2, PMID:10852932; member of
the 1 pore, 6 transmembrane (1P/6TM- Shaker-type) K+
channel family, PMID:11500563; identical to cDNA
inward-rectifying K+ channel (AKT3) GI:1172219
Length = 802
Score = 27.9 bits (59), Expect = 6.2
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = -2
Query: 417 SHYLL--RFPSXINXWTNRLPRRSKTKLQLSCTFAIYRGI 304
S+YL+ R+P WT+ +P ++T L + AIY I
Sbjct: 233 SYYLIADRYPHQGKTWTDAIPNFTETSLSIRYIAAIYWSI 272
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,618,020
Number of Sequences: 28952
Number of extensions: 245842
Number of successful extensions: 689
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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