Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_K21
         (654 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28474| Best HMM Match : GSH_synthase (HMM E-Value=3.20001e-40)      97   1e-20
SB_42042| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_21814| Best HMM Match : DUF1323 (HMM E-Value=8)                     29   4.4  
SB_6238| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.8  
SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_8318| Best HMM Match : OTU (HMM E-Value=7.4e-19)                    28   7.6  

>SB_28474| Best HMM Match : GSH_synthase (HMM E-Value=3.20001e-40)
          Length = 372

 Score = 97.1 bits (231), Expect = 1e-20
 Identities = 44/80 (55%), Positives = 57/80 (71%)
 Frame = +2

Query: 413 DGHPVAVVYYRSGYEPAQYPTAREWDARLRVERSTAIKCPSIHYQLAGTKKVQQALAGPG 592
           +GH VAVVY+R+GY P+ Y +   W +RL +ERS AIKCP++  QL GTKKVQQ LA PG
Sbjct: 286 EGHEVAVVYFRAGYSPSCYNSEDAWTSRLMIERSKAIKCPTMATQLVGTKKVQQVLAEPG 345

Query: 593 VLEKFMGSGTSTSRVRDIFT 652
           VLE+F+    +  R+R  FT
Sbjct: 346 VLERFVSDQDALRRIRATFT 365


>SB_42042| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 863

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
 Frame = +3

Query: 465 STPPQGNGMRDYASKDPRP*NV-HRSTTNWRERRRSNKPWPVPGCWRSSWA-PGR 623
           STP + N      S+   P +   R  T W    R N PWP P  + + W+ P R
Sbjct: 625 STPSRYNTPWSTPSRYNTPWSTPSRYNTPWSTPSRYNTPWPTPSRYNTPWSTPSR 679


>SB_21814| Best HMM Match : DUF1323 (HMM E-Value=8)
          Length = 359

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 19/55 (34%), Positives = 24/55 (43%)
 Frame = +1

Query: 451 VRAGSVPHRKGMGCEITRRKIHGHKMSIDPLPTGGNEEGPTSPGRSRGAGEVHGL 615
           VR G +   KG   +  R K+HGH +  +P P      GP  PGR       H L
Sbjct: 24  VRKGLLRVAKGRSRKHVRPKVHGHLLQGEP-PKA--PAGPEHPGRGHPRNIKHRL 75


>SB_6238| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 112

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 448 RVRAGSVPHRKGMGCEITRRKIHGHKMSIDPLPT 549
           R R  S+ HR      IT   +HG K+++ P  T
Sbjct: 18  RARTSSLKHRYPPSLPITPTPVHGDKITVTPFKT 51


>SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 964

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 538 PLPTGGNEEGPTSPGRSRGAG 600
           P P G  +EGP  PG  +G G
Sbjct: 579 PPPPGAGQEGPPPPGAGQGGG 599


>SB_8318| Best HMM Match : OTU (HMM E-Value=7.4e-19)
          Length = 728

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +1

Query: 196 SNQKKKFDINESTYLLNVKKKYRQFTKTSLRPEK 297
           SN+ KK D   +TY+    K+YRQ  + +  PEK
Sbjct: 692 SNETKKQD--RATYIRQYMKEYRQSKQNNTSPEK 723


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,463,966
Number of Sequences: 59808
Number of extensions: 401745
Number of successful extensions: 1157
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1024
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1150
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)