Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P03_F_K17
(654 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 29 0.59
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ... 28 1.0
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 27 2.4
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 27 2.4
SPBC16A3.08c |||nuclear telomere cap complex subunit |Schizosacc... 27 3.1
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 25 7.2
SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch... 25 7.2
SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|ch... 25 9.5
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 9.5
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce... 25 9.5
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 29.1 bits (62), Expect = 0.59
Identities = 17/48 (35%), Positives = 31/48 (64%)
Frame = -2
Query: 653 KSASTMASLRATSSYFLSDSSAMSFACDS*ASKMATRSSSMLVRFSSA 510
+S+S+ ASL ++SS L+ SS+ S S + +++ SSS++ SS+
Sbjct: 90 QSSSSSASLTSSSSATLTSSSSASPTSSSSSHALSSSSSSLVASSSSS 137
>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 932
Score = 28.3 bits (60), Expect = 1.0
Identities = 21/65 (32%), Positives = 28/65 (43%)
Frame = +3
Query: 228 DKHAARNDFXRFEEXNASNERGNGKI*GRVRGVPQTVASGNYAXRRS*VRSGCPEPTYPT 407
D H++R + + + A+N NGK R G P + SGN A S P YPT
Sbjct: 3 DSHSSRRKYEKEKLVFATN---NGK---RTEGTPAFLKSGNTASSSSPTLQFRPTSRYPT 56
Query: 408 AGGGP 422
P
Sbjct: 57 LSHEP 61
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 27.1 bits (57), Expect = 2.4
Identities = 17/47 (36%), Positives = 27/47 (57%)
Frame = -2
Query: 650 SASTMASLRATSSYFLSDSSAMSFACDS*ASKMATRSSSMLVRFSSA 510
S+S+ +S+ TSS S SS+ S + S +S + SSS + SS+
Sbjct: 201 SSSSSSSVPITSSTSSSHSSSSSSSSSSSSSSRPSSSSSFITTMSSS 247
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 27.1 bits (57), Expect = 2.4
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -2
Query: 647 ASTMASLRATSSYFLSDSSAMSFACDS*ASKMATRSSS 534
A +M R +SSYF++ SS+ + S +S + SSS
Sbjct: 133 APSMIGTRTSSSYFITSSSSTPSSSSSSSSSSPSSSSS 170
>SPBC16A3.08c |||nuclear telomere cap complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 284
Score = 26.6 bits (56), Expect = 3.1
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Frame = +1
Query: 463 LSEASQAADESERIRKALENRTNME----DDRVAILEAQLSQAKLIAEESDKK 609
LSE AA R + LEN T +E ++ A L+ SQ K A+ES K
Sbjct: 181 LSERKSAAKPVGRTVEKLENATKVEKSAPEELFASLKKSASQKKSAAKESKPK 233
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/49 (26%), Positives = 28/49 (57%)
Frame = +1
Query: 496 ERIRKALENRTNMEDDRVAILEAQLSQAKLIAEESDKKYEEVARKLAMV 642
E+I ALE N+ ++A + + +A ++ E + K+ ++ +KLA +
Sbjct: 260 EQITTALELPNNVFGKKMANIINDIGRACIVTETNIKELLKIGQKLAQI 308
>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 593
Score = 25.4 bits (53), Expect = 7.2
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = -3
Query: 499 ARIHRRPGWPRTAWRWRSRDAPRTSRGPPPAVGYVGSGQPLRTQLL 362
AR H RP R + R + + A G PP+ + SG R + L
Sbjct: 82 ARQHERPFRSRKSRRRKGKKAFSPRPGSPPSPSFYRSGSQKRARNL 127
>SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 794
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Frame = -3
Query: 136 SLARRYYFV----SLRWARHEHSRRIKWPPPNLDATKISLP 26
S+A YY+V + W+ HE + RI N+ + +S+P
Sbjct: 325 SVANHYYYVGDPLTPGWSAHEETNRISPKDANVLPSIVSIP 365
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.0 bits (52), Expect = 9.5
Identities = 15/47 (31%), Positives = 29/47 (61%)
Frame = -2
Query: 650 SASTMASLRATSSYFLSDSSAMSFACDS*ASKMATRSSSMLVRFSSA 510
S+ + +S+ +TSS S SS++S + S + ++ SSS++ SS+
Sbjct: 233 SSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSS 279
>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 993
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -3
Query: 340 ATVCGTPRTRPYIFPFP 290
A+V GTP RP F FP
Sbjct: 771 ASVDGTPMVRPLFFEFP 787
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,217,718
Number of Sequences: 5004
Number of extensions: 40413
Number of successful extensions: 144
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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