Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_K17
         (654 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    26   0.28 
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    24   1.1  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    24   1.5  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   3.4  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   7.9  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   7.9  

>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 26.2 bits (55), Expect = 0.28
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
 Frame = +1

Query: 508 KALENRTNMEDDRVAILEAQLS---QAKLIAEESDKKYEEVARKLAM 639
           K L N  N  D R    E +L    +A L+ +E +++YE++ RK+ +
Sbjct: 16  KQLRNEDNKIDLRSRTKEERLQYRREAWLVQQEREQEYEKLKRKMIL 62


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 13/51 (25%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
 Frame = -2

Query: 230 VVILIHFCVKIECLNXNKQRHLRPTRENAN*QPRSSLLF-RIVEMGSARTQ 81
           ++++++   +I C+  ++ R+L  T E+ N +PR ++L  R   + + RT+
Sbjct: 211 MLVMLYVYGRISCVIASRHRNLEAT-ESENVRPRRNVLIERAKSIRARRTE 260


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +1

Query: 325 YHKRLQVEIMRXE 363
           YHK LQ+E++R E
Sbjct: 156 YHKELQIELVREE 168


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = +1

Query: 517 ENRTNMEDDRVAILEAQLSQAKLIAEESDKKYEEVARKLAMV 642
           + RT    DRV  LEA+      + ++  +  + +   LA+V
Sbjct: 338 DRRTRHLSDRVVALEAEKKNLSKVIDQHSQLIDTLENVLAIV 379


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 5/9 (55%), Positives = 8/9 (88%)
 Frame = -2

Query: 248 VPCCMFVVI 222
           +PCCM V++
Sbjct: 250 IPCCMLVIV 258


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 5/9 (55%), Positives = 8/9 (88%)
 Frame = -2

Query: 248 VPCCMFVVI 222
           +PCCM V++
Sbjct: 250 IPCCMLVIV 258


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,064
Number of Sequences: 438
Number of extensions: 3440
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)