Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_K14
         (638 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.13 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces...    49   5e-07
SPCC1753.03c |rec7||meiotic recombination protein Rec7 |Schizosa...    26   5.3  
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy...    26   5.3  
SPAC2E1P5.01c |mns1|SPAPB1E7.13c|mannosyl-oligosaccharide 1,2-al...    25   7.0  
SPBP8B7.10c |||U3 snoRNP-associated protein Utp16 |Schizosacchar...    25   9.2  

>SPAC343.13 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 526

 Score = 49.2 bits (112), Expect = 5e-07
 Identities = 29/77 (37%), Positives = 34/77 (44%)
 Frame = +1

Query: 367 LEQDSGKSLHDAXLKXSLXDLNRAGAPLIXVVFEPXLQDGXXXXXXXXXXXXIVXRLGAC 546
           LEQD+ KS         L D NRAG PL+ +V +P   D             IV   G  
Sbjct: 129 LEQDTAKSTSAKNPSRILLDYNRAGTPLLEIVTKPCFHDVNTVSAFLFKLQSIVRFAGIS 188

Query: 547 TGRMEQGALRVDANVSI 597
              ME G +R D NVSI
Sbjct: 189 EALMENGGMRCDVNVSI 205


>SPCC1753.03c |rec7||meiotic recombination protein Rec7
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 339

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +2

Query: 230 IFYINLLKTVPQTYTSFFLHSNFNRYSHQDFTKSLT 337
           IF I        +YT+   H N++ YS   FT SLT
Sbjct: 3   IFPIVKYSVAEDSYTTDSSHINWSHYSDGGFTLSLT 38


>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1201

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 239  INLLKTVPQTYTSFFLHSNFNRYSHQDFTKS 331
            +N+ KT+ +    F  H+NFN+    DF  S
Sbjct: 1136 VNIQKTLAKCAEEFAEHTNFNKVELLDFVYS 1166


>SPAC2E1P5.01c |mns1|SPAPB1E7.13c|mannosyl-oligosaccharide
           1,2-alpha-mannosidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 521

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -2

Query: 184 IALMTLTKYLINNKIRLISHFDFFKIFVIKQQVQL 80
           I +  +T   +   IRL SH D +  +++KQ +QL
Sbjct: 242 ITVNLITGAYVGRNIRLGSHGDSYYEYLLKQDLQL 276


>SPBP8B7.10c |||U3 snoRNP-associated protein Utp16
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 346

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 4/48 (8%)
 Frame = +2

Query: 221 LTYIFYINLLKTVPQTYTSFFLHSNFNR----YSHQDFTKSLTRKAQK 352
           L  +F     KT   TY   F+H +F      +SH   + S T   QK
Sbjct: 29  LNKLFIDKFCKTQESTYPIHFVHCHFGGIKKFHSHCQLSSSYTNSGQK 76


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,088,542
Number of Sequences: 5004
Number of extensions: 34217
Number of successful extensions: 68
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)