Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_K14
         (638 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0023 - 19325966-19326046,19326132-19326248,19326635-193267...    67   1e-11
04_04_1359 - 32886181-32886789                                         32   0.44 
08_01_0657 + 5674907-5674993,5675615-5676583                           28   5.4  
03_03_0177 + 15140414-15140777,15142067-15142239                       27   9.5  

>11_06_0023 -
           19325966-19326046,19326132-19326248,19326635-19326703,
           19326922-19327119,19327388-19327591,19327688-19327828,
           19328416-19328625,19329330-19329944
          Length = 544

 Score = 67.3 bits (157), Expect = 1e-11
 Identities = 33/81 (40%), Positives = 45/81 (55%)
 Frame = +1

Query: 367 LEQDSGKSLHDAXLKXSLXDLNRAGAPLIXVVFEPXLQDGXXXXXXXXXXXXIVXRLGAC 546
           +E+D+GK LH      S  DLNRAG PL+ +V EP ++ G            +V  LG  
Sbjct: 188 MEEDAGKLLHSESGSYSQVDLNRAGVPLLEIVSEPDMRTGIEAAEYGAELQRLVRYLGVS 247

Query: 547 TGRMEQGALRVDANVSIRRPG 609
            G M++G+LR D NVS+R  G
Sbjct: 248 NGNMQEGSLRCDVNVSVRPIG 268


>04_04_1359 - 32886181-32886789
          Length = 202

 Score = 31.9 bits (69), Expect = 0.44
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = -1

Query: 545 HAPRRCTINTNSLTKAAAXSPSCKXGSNTTXMSGAPALFRSXKLXLSXA 399
           HAPR   ++++S   AA  +  C   +NTT +   PA FR+    L+ A
Sbjct: 6   HAPRSVVVSSSS-PAAAIATAGCVVDTNTTFVQADPATFRALVQKLTGA 53


>08_01_0657 + 5674907-5674993,5675615-5676583
          Length = 351

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 24/82 (29%), Positives = 33/82 (40%), Gaps = 2/82 (2%)
 Frame = -1

Query: 608 PGRRIETLASTRSAPCSIRPVHAPRRCTINTNSLTKAAAXSPSCKXGSNTTXMSGAPAL- 432
           P RR++ L   ++ P     V A  RC + +NS T +AA              S A  L 
Sbjct: 57  PHRRLQPLGRPQARPPRRADVKAALRCRLISNSATTSAAVDGHVSHAFKRAGESSAWVLI 116

Query: 431 FRSXKLXLSXASCRD-FPLSCS 369
            R   L  S A   D F + C+
Sbjct: 117 LRRSALEASGAIVDDAFTVECT 138


>03_03_0177 + 15140414-15140777,15142067-15142239
          Length = 178

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = -1

Query: 584 ASTRSAPCSI-RPVHAPRRCTINTNSLTKAAAXSPSCKXGSNTTXMSGAPA 435
           + T   P +I R +H P  C  + ++ +K  A +PS      T+  SG  A
Sbjct: 91  SKTLPLPINITRALHLPAACGADASAFSKCLAPAPSPSVAPGTSSGSGGAA 141


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,729,193
Number of Sequences: 37544
Number of extensions: 198366
Number of successful extensions: 397
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 397
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)