Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_K14
         (638 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31789| Best HMM Match : Ion_trans (HMM E-Value=6.3e-37)             30   1.4  
SB_50942| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.6  
SB_51109| Best HMM Match : ATP-cone (HMM E-Value=0.76)                 28   5.6  

>SB_31789| Best HMM Match : Ion_trans (HMM E-Value=6.3e-37)
          Length = 583

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -1

Query: 551 PVHAPRRCTINTNSLTKAAAXSPSCKXGSNTTXMSG 444
           P HAP R TIN N++       P C   SN + M+G
Sbjct: 512 PKHAPNRATINANNI----CDPPRCLGTSNGSAMAG 543


>SB_50942| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 638

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 9/24 (37%), Positives = 20/24 (83%)
 Frame = -2

Query: 112 KIFVIKQQVQLQLQTKMRRGKGRQ 41
           K+++ +Q++QLQLQT++ + K ++
Sbjct: 463 KLYIEQQELQLQLQTRLAKAKAQE 486


>SB_51109| Best HMM Match : ATP-cone (HMM E-Value=0.76)
          Length = 250

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 9/24 (37%), Positives = 20/24 (83%)
 Frame = -2

Query: 112 KIFVIKQQVQLQLQTKMRRGKGRQ 41
           K+++ +Q++QLQLQT++ + K ++
Sbjct: 169 KLYIEQQELQLQLQTRLAKAKAQE 192


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,335,111
Number of Sequences: 59808
Number of extensions: 244476
Number of successful extensions: 483
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 483
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)