Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_K14
         (638 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006617-1|AAF39770.2|  397|Caenorhabditis elegans Hypothetical ...    56   2e-08
U40941-6|AAA81711.2|  435|Caenorhabditis elegans Jnk kinase prot...    29   2.8  
AB024086-1|BAA82641.1|  435|Caenorhabditis elegans JKK-1 protein.      29   2.8  
AF047661-3|AAC04436.1|  198|Caenorhabditis elegans Hypothetical ...    28   4.9  
U23515-7|AAK93859.3|  868|Caenorhabditis elegans Larp (rna bindi...    27   8.6  
U23515-6|ABC71805.1| 1065|Caenorhabditis elegans Larp (rna bindi...    27   8.6  

>AC006617-1|AAF39770.2|  397|Caenorhabditis elegans Hypothetical
           protein C39B5.6 protein.
          Length = 397

 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 34/93 (36%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
 Frame = +1

Query: 367 LEQDSGKSLH---DAXLKXSLXDLNRAGAPLIXVVFEPXLQDGXXXXXXXXXXXXIVXRL 537
           LEQDSGK++H    A    SL D NRAG  L+ +V  P                 ++   
Sbjct: 38  LEQDSGKTIHMTSQAAPPTSLIDYNRAGCALVEIVTSPCFTTAIEAIRFVQILRLLLIHH 97

Query: 538 GACTGRMEQGALRVDANVSIRRPGDPLSTRTXI 636
             C G + +G +RVDANVS+ +  D   TRT I
Sbjct: 98  AICDGELHRGHIRVDANVSLAK-DDVWGTRTEI 129


>U40941-6|AAA81711.2|  435|Caenorhabditis elegans Jnk kinase protein
           1 protein.
          Length = 435

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = -1

Query: 620 DKGSPGRRIETLASTRSAPCSIRPVHAPRRCTINTNS 510
           D G  G   +++A ++SA C   P  AP R TI TNS
Sbjct: 264 DFGISGFMTDSMAHSKSAGCP--PYMAPERLTIETNS 298


>AB024086-1|BAA82641.1|  435|Caenorhabditis elegans JKK-1 protein.
          Length = 435

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = -1

Query: 620 DKGSPGRRIETLASTRSAPCSIRPVHAPRRCTINTNS 510
           D G  G   +++A ++SA C   P  AP R TI TNS
Sbjct: 264 DFGISGFMTDSMAHSKSAGCP--PYMAPERLTIETNS 298


>AF047661-3|AAC04436.1|  198|Caenorhabditis elegans Hypothetical
           protein M70.2 protein.
          Length = 198

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 20/65 (30%), Positives = 30/65 (46%)
 Frame = -1

Query: 623 VDKGSPGRRIETLASTRSAPCSIRPVHAPRRCTINTNSLTKAAAXSPSCKXGSNTTXMSG 444
           +D+ S      T+AS R    + R      +    TNS  KAAA + +   G++TT   G
Sbjct: 104 IDQSSKDPTRTTMASERGMTMTQRV--QKEKSIKKTNSELKAAADNQTVTQGNDTTTTQG 161

Query: 443 APALF 429
             +LF
Sbjct: 162 PSSLF 166


>U23515-7|AAK93859.3|  868|Caenorhabditis elegans Larp (rna binding
           la related protein)homolog protein 1, isoform a protein.
          Length = 868

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 269 YTSFFLHSNFNRYSHQDFTKSLTRKAQ 349
           + SFFL  NFNR  +++F K     A+
Sbjct: 732 FWSFFLRDNFNRNMYEEFRKLALEDAE 758


>U23515-6|ABC71805.1| 1065|Caenorhabditis elegans Larp (rna binding la
            related protein)homolog protein 1, isoform b protein.
          Length = 1065

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 269  YTSFFLHSNFNRYSHQDFTKSLTRKAQ 349
            + SFFL  NFNR  +++F K     A+
Sbjct: 929  FWSFFLRDNFNRNMYEEFRKLALEDAE 955


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,580,983
Number of Sequences: 27780
Number of extensions: 195678
Number of successful extensions: 397
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 396
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)