Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_K14
         (638 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g48520.3 68414.m05424 glutamyl-tRNA(Gln) amidotransferase B f...    66   2e-11
At1g48520.2 68414.m05423 glutamyl-tRNA(Gln) amidotransferase B f...    66   2e-11
At1g48520.1 68414.m05425 glutamyl-tRNA(Gln) amidotransferase B f...    66   2e-11

>At1g48520.3 68414.m05424 glutamyl-tRNA(Gln) amidotransferase B
           family protein contains Pfam profiles: PF02934 PET112
           family, N terminal region, PF02637 GatB/Yqey domain,
           PF01162 PET112 family, C terminal region
          Length = 488

 Score = 66.1 bits (154), Expect = 2e-11
 Identities = 33/81 (40%), Positives = 44/81 (54%)
 Frame = +1

Query: 367 LEQDSGKSLHDAXLKXSLXDLNRAGAPLIXVVFEPXLQDGXXXXXXXXXXXXIVXRLGAC 546
           +E+D+GK LH      S  DLNRAG PL+ +V EP ++ G            I   LG  
Sbjct: 194 MEEDAGKLLHSDTGDYSQVDLNRAGVPLLEIVSEPDMRSGIEAAEYACEMQRIARYLGVS 253

Query: 547 TGRMEQGALRVDANVSIRRPG 609
            G M++G+LR D N+SIR  G
Sbjct: 254 NGNMQEGSLRCDVNISIRPIG 274


>At1g48520.2 68414.m05423 glutamyl-tRNA(Gln) amidotransferase B
           family protein contains Pfam profiles: PF02934 PET112
           family, N terminal region, PF02637 GatB/Yqey domain,
           PF01162 PET112 family, C terminal region
          Length = 475

 Score = 66.1 bits (154), Expect = 2e-11
 Identities = 33/81 (40%), Positives = 44/81 (54%)
 Frame = +1

Query: 367 LEQDSGKSLHDAXLKXSLXDLNRAGAPLIXVVFEPXLQDGXXXXXXXXXXXXIVXRLGAC 546
           +E+D+GK LH      S  DLNRAG PL+ +V EP ++ G            I   LG  
Sbjct: 194 MEEDAGKLLHSDTGDYSQVDLNRAGVPLLEIVSEPDMRSGIEAAEYACEMQRIARYLGVS 253

Query: 547 TGRMEQGALRVDANVSIRRPG 609
            G M++G+LR D N+SIR  G
Sbjct: 254 NGNMQEGSLRCDVNISIRPIG 274


>At1g48520.1 68414.m05425 glutamyl-tRNA(Gln) amidotransferase B
           family protein contains Pfam profiles: PF02934 PET112
           family, N terminal region, PF02637 GatB/Yqey domain,
           PF01162 PET112 family, C terminal region
          Length = 550

 Score = 66.1 bits (154), Expect = 2e-11
 Identities = 33/81 (40%), Positives = 44/81 (54%)
 Frame = +1

Query: 367 LEQDSGKSLHDAXLKXSLXDLNRAGAPLIXVVFEPXLQDGXXXXXXXXXXXXIVXRLGAC 546
           +E+D+GK LH      S  DLNRAG PL+ +V EP ++ G            I   LG  
Sbjct: 194 MEEDAGKLLHSDTGDYSQVDLNRAGVPLLEIVSEPDMRSGIEAAEYACEMQRIARYLGVS 253

Query: 547 TGRMEQGALRVDANVSIRRPG 609
            G M++G+LR D N+SIR  G
Sbjct: 254 NGNMQEGSLRCDVNISIRPIG 274


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,588,461
Number of Sequences: 28952
Number of extensions: 167416
Number of successful extensions: 317
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 317
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)