Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P03_F_K11
(546 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein L21|Sch... 177 9e-46
SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein L21|Sc... 177 1e-45
SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|... 27 1.4
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces... 25 5.5
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi... 25 5.5
SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 7.3
SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydro... 25 9.6
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 25 9.6
>SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein
L21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 160
Score = 177 bits (431), Expect = 9e-46
Identities = 86/149 (57%), Positives = 101/149 (67%), Gaps = 1/149 (0%)
Frame = +1
Query: 70 AAPXHLFARRFRTHGTIPLSTYMKVYKVGDIVXIRGNGAVQKGMPHKVYHGKTGRVYNVT 249
A + F R FR HG I LSTY+K YKVGDIV I+ NGAVQKGMPHK YHGKTG VYNVT
Sbjct: 9 ARTRYTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGKTGVVYNVT 68
Query: 250 AHALGVIVNKRVRGRIIPKRINIRVEHVKHSKCXQXFXXXXXXXXXXXXEAKAAGKTVNL 429
++GV++ K V R + KR+N+R+EHVKHSKC Q F EAKA GKTV L
Sbjct: 69 QSSVGVLIYKVVGNRYMEKRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEAKAQGKTVQL 128
Query: 430 KRQPAPPKAAHIVS-GTEKPVLLAPIPYE 513
+RQPAPP AH VS +PV L P+ Y+
Sbjct: 129 RRQPAPPATAHFVSTENNEPVTLHPVAYD 157
>SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein
L21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 177 bits (430), Expect = 1e-45
Identities = 86/149 (57%), Positives = 101/149 (67%), Gaps = 1/149 (0%)
Frame = +1
Query: 70 AAPXHLFARRFRTHGTIPLSTYMKVYKVGDIVXIRGNGAVQKGMPHKVYHGKTGRVYNVT 249
A + F R FR HG I LSTY+K YKVGDIV I+ NGAVQKGMPHK YHGKTG VYNVT
Sbjct: 9 ARTRYTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGKTGVVYNVT 68
Query: 250 AHALGVIVNKRVRGRIIPKRINIRVEHVKHSKCXQXFXXXXXXXXXXXXEAKAAGKTVNL 429
++GV++ K V R + KR+N+R+EHVKHSKC Q F EAKA GKTV L
Sbjct: 69 QSSVGVLIYKVVGNRYMEKRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEAKAQGKTVQL 128
Query: 430 KRQPAPPKAAHIVS-GTEKPVLLAPIPYE 513
+RQPAPP AH VS +PV L P+ Y+
Sbjct: 129 RRQPAPPAKAHFVSTENNEPVTLHPVAYD 157
>SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 759
Score = 27.5 bits (58), Expect = 1.4
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Frame = -1
Query: 486 GFLSSTDDVGSFRGSWLSLQVDGLAGSL-GFLQ----*PXILFDSLKEVLXALGVLDMLN 322
GF S+T SF+G W+ L + + G L G LQ +++SL EV ++ + L+
Sbjct: 445 GFASATILPMSFQGGWIDLPIAFILGCLVGILQHYIAPRSTMYNSLFEVTGSI-ITSFLS 503
Query: 321 TDIDALRYN 295
++RY+
Sbjct: 504 RAFGSIRYS 512
>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 419
Score = 25.4 bits (53), Expect = 5.5
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -1
Query: 312 DALRYNPSANTLVDNHTES 256
D R N S N ++DNHT++
Sbjct: 29 DPARKNESTNDVIDNHTDT 47
>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
Usp104|Schizosaccharomyces pombe|chr 1|||Manual
Length = 695
Score = 25.4 bits (53), Expect = 5.5
Identities = 11/35 (31%), Positives = 14/35 (40%)
Frame = +3
Query: 117 YSALHVHESVQSWRHCXHQRQWCSSKGYATQSIPW 221
+ L H SW R+ C +KGY PW
Sbjct: 199 FKFLDSHNVNPSWTWEQTVRELCDAKGYYVMKDPW 233
>SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 433
Score = 25.0 bits (52), Expect = 7.3
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +1
Query: 397 EAKAAGKTVNLKRQPAPPKAAHIVSGT 477
+ KA K + +QP+PP A H + T
Sbjct: 344 DTKAGEKLTDSSKQPSPPVAEHFSNET 370
>SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydroxy-
6-
hydroxymethyldihydropteridinediphosphokinase/dihydroneop
terinaldolase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 24.6 bits (51), Expect = 9.6
Identities = 11/43 (25%), Positives = 19/43 (44%)
Frame = -1
Query: 240 VHATCLSMVYFVWHTLLNCTIASDVYNVSNFVHFHVRGERNSS 112
+ + C V H + T+ V N +H++ ERNS+
Sbjct: 83 IASLCFEDVIDTSHVSIKLTLPKCVLRSKNGLHYYAERERNST 125
>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1427
Score = 24.6 bits (51), Expect = 9.6
Identities = 7/15 (46%), Positives = 13/15 (86%)
Frame = -1
Query: 441 WLSLQVDGLAGSLGF 397
WL+++ DG++G +GF
Sbjct: 1085 WLAIRTDGISGLVGF 1099
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,037,926
Number of Sequences: 5004
Number of extensions: 37647
Number of successful extensions: 132
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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