Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P03_F_K08
(654 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 160 8e-40
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 129 2e-30
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09) 111 6e-25
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018) 52 5e-07
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0) 45 6e-05
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26) 39 0.003
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.088
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34) 33 0.15
SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07) 30 1.4
SB_19088| Best HMM Match : PSGP (HMM E-Value=2.5) 30 1.4
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10) 30 1.9
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 29 2.5
SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_34931| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.46) 29 3.3
SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05) 29 4.4
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 160 bits (389), Expect = 8e-40
Identities = 68/157 (43%), Positives = 107/157 (68%)
Frame = +2
Query: 152 YKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETXKYYVT 331
Y G +DKRT+ K+E+EA E + ++ +W LD + ER++G T+++ F+T + T
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGNTVEVGRAAFDTDTKHFT 225
Query: 332 IIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEXGISKNGQTREHALLAFTLGVKQL 511
++DAPGH+ F+ NMI+G +QAD VL+++A GEFE G + GQTREHA+LA T GVK L
Sbjct: 226 LLDAPGHKSFVPNMISGATQADLGVLVISARKGEFETGFERGGQTREHAMLAKTAGVKHL 285
Query: 512 IVXVNKMDSTEPPYSEPXFXEIXXEVSSYIKXIGYNP 622
++ VNKMD ++E + EI +++ ++K +G+NP
Sbjct: 286 VILVNKMDDPTVKWNEERYEEIKVKLTPFLKKVGFNP 322
>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
Length = 322
Score = 129 bits (311), Expect = 2e-30
Identities = 58/60 (96%), Positives = 59/60 (98%)
Frame = +2
Query: 212 MGKGSFKYAWVLDKLKAERERGITIDIALWKFETXKYYVTIIDAPGHRDFIKNMITGTSQ 391
MGKGSFKYAWVLDKLKAERERGITIDIALWKFET KYYVT+IDAPGHRDFIKNMITGTSQ
Sbjct: 1 MGKGSFKYAWVLDKLKAERERGITIDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60
>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
Length = 123
Score = 111 bits (266), Expect = 6e-25
Identities = 49/84 (58%), Positives = 64/84 (76%)
Frame = +2
Query: 284 IDIALWKFETXKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEXGISKNGQ 463
+D+ L +F+T +T++DAPGH+DFI NMITG +QAD A+L+V A TGEFE G GQ
Sbjct: 1 MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQ 60
Query: 464 TREHALLAFTLGVKQLIVXVNKMD 535
TREHA+L +LGV QLIV +NK+D
Sbjct: 61 TREHAILVRSLGVTQLIVAINKLD 84
>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
Length = 106
Score = 51.6 bits (118), Expect = 5e-07
Identities = 24/27 (88%), Positives = 24/27 (88%)
Frame = +1
Query: 67 MGKEKTHINIVVIGHVDSGKSTTTGSL 147
M KEK HINIVVIGHVDSGKSTTTG L
Sbjct: 1 MPKEKIHINIVVIGHVDSGKSTTTGHL 27
Score = 48.4 bits (110), Expect = 5e-06
Identities = 20/24 (83%), Positives = 22/24 (91%)
Frame = +2
Query: 143 HLIYKCGGIDKRTIXKFEKEAXEM 214
HLIYKCGGIDKRTI KFEKE+ E+
Sbjct: 26 HLIYKCGGIDKRTIEKFEKESSEV 49
>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 359
Score = 44.8 bits (101), Expect = 6e-05
Identities = 28/113 (24%), Positives = 52/113 (46%)
Frame = +2
Query: 197 KEAXEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETXKYYVTIIDAPGHRDFIKNMI 376
+EA + K D ++ ER+RGI++ ++ F + I+D PGH+DF ++
Sbjct: 38 QEAGAVKSNKIKKGATSDFMEIERQRGISVATSVLAFNYRDKKINILDTPGHKDFAEDTF 97
Query: 377 TGTSQADCAVLIVAAGTGEFEXGISKNGQTREHALLAFTLGVKQLIVXVNKMD 535
+ D ++++ G E QT + + + +IV +NKMD
Sbjct: 98 RTLTAVDSVIVVIDVAKGVEE-------QTEKLVEVCRMRNI-PMIVFINKMD 142
>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
Length = 541
Score = 39.1 bits (87), Expect = 0.003
Identities = 29/117 (24%), Positives = 49/117 (41%)
Frame = +2
Query: 251 KLKAERERGITIDIALWKFETXKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 430
+ K E ER ITI + Y +D PGH + M+ G + D A+L++A
Sbjct: 49 RFKNELERNITIKLG--------YANAKVDCPGHDILMATMLNGAAVMDAALLLIAGNES 100
Query: 431 EFEXGISKNGQTREHALLAFTLGVKQLIVXVNKMDSTEPPYSEPXFXEIXXEVSSYI 601
QT EH + +K +++ NK+D + ++ + +I V I
Sbjct: 101 ------CPQPQTSEHLAAIEIMKLKHILILQNKIDLVKESQAKDQYDQILKFVQGTI 151
>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 545
Score = 34.3 bits (75), Expect = 0.088
Identities = 24/70 (34%), Positives = 34/70 (48%)
Frame = +2
Query: 326 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEXGISKNGQTREHALLAFTLGVK 505
+T ID PGH F G + D VL+VAA G ++ ++ HA+ A
Sbjct: 78 ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDGV----KTQTVESIRHAMHAKV---- 129
Query: 506 QLIVXVNKMD 535
LIV +NK+D
Sbjct: 130 PLIVAINKID 139
>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
Length = 240
Score = 33.5 bits (73), Expect = 0.15
Identities = 24/87 (27%), Positives = 35/87 (40%)
Frame = +2
Query: 275 GITIDIALWKFETXKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEXGISK 454
GIT I + + + +D PGH F G D +++VAA
Sbjct: 123 GITQHIGAYSVKVGDQKIAFLDTPGHEAFTAMRARGAQVTDLVIIVVAADDDVMP----- 177
Query: 455 NGQTREHALLAFTLGVKQLIVXVNKMD 535
QT+E A GV +I +NK+D
Sbjct: 178 --QTKEAISHAQAAGV-PIIFAINKID 201
>SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)
Length = 203
Score = 30.3 bits (65), Expect = 1.4
Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 13/87 (14%)
Frame = +2
Query: 248 DKLKAERERGITIDIALWKFETXK-------------YYVTIIDAPGHRDFIKNMITGTS 388
DK +ERGIT+D+ F+ +T++D PGH IK +I G
Sbjct: 65 DKNPQSQERGITLDLGFSSFQVALPEHLRSAGSEHDLLQMTLVDCPGHASLIKTIIGG-- 122
Query: 389 QADCAVLIVAAGTGEFEXGISKNGQTR 469
A +I GT E G ++G+ +
Sbjct: 123 ----AQIIGECGT--IEGGFGQSGKVK 143
>SB_19088| Best HMM Match : PSGP (HMM E-Value=2.5)
Length = 737
Score = 30.3 bits (65), Expect = 1.4
Identities = 20/77 (25%), Positives = 31/77 (40%)
Frame = -3
Query: 370 VLDEISVSRSINDGNIVLXSFELPESNIDCDTTLTLSL*FVQYPSIFEGSFTHFXGLLLE 191
V I ++ + N V + + D TT+T S YPS+ + +F
Sbjct: 316 VASSIQLNITSNTTVEVNDTLRTTSTTADFPTTITPSPNITSYPSLMTSAVGNFTSAKSV 375
Query: 190 LXDGTFVNTTTFVDQVS 140
+ D T N TT V +S
Sbjct: 376 VFDSTTPNATTLVPSIS 392
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = -3
Query: 277 TTLTLSL*FVQYPSIFEGSFTHFXGLLLELXDGTFVNTTTFVDQVS 140
TT+T S YPS+ + +F + D T N TT V +S
Sbjct: 548 TTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVQSIS 593
>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
Length = 783
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +2
Query: 332 IIDAPGHRDFIKNMITGTSQADCAVLIV 415
IID PGH F G+S D A+L+V
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILVV 709
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/27 (55%), Positives = 17/27 (62%)
Frame = +1
Query: 67 MGKEKTHINIVVIGHVDSGKSTTTGSL 147
M K+ N+ VI HVD GKST T SL
Sbjct: 12 MDKKLNIRNMSVIAHVDHGKSTLTDSL 38
Score = 28.3 bits (60), Expect = 5.8
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +2
Query: 320 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 430
+ + +ID+PGH DF + D A+++V +G
Sbjct: 99 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 135
>SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1229
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = -3
Query: 277 TTLTLSL*FVQYPSIFEGSFTHFXGLLLELXDGTFVNTTTFVDQVS 140
TT+T S YPS+ + +F + D T N TT V +S
Sbjct: 437 TTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVPSIS 482
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = -3
Query: 277 TTLTLSL*FVQYPSIFEGSFTHFXGLLLELXDGTFVNTTTFVDQVS 140
TT+T S YPS+ + +F + D T N TT V ++
Sbjct: 236 TTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVPSIT 281
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +2
Query: 242 VLDKLKAERERGITI 286
VLDKL+ ERERGIT+
Sbjct: 1977 VLDKLQVERERGITV 1991
>SB_34931| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.46)
Length = 572
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = -3
Query: 277 TTLTLSL*FVQYPSIFEGSFTHFXGLLLELXDGTFVNTTTFVDQVS 140
TT+T S YPS+ + +F + D T N TT V +S
Sbjct: 18 TTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVPSIS 63
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = -3
Query: 277 TTLTLSL*FVQYPSIFEGSFTHFXGLLLELXDGTFVNTTTFVDQVS 140
TT+T S YPS+ + +F + D T N TT V +S
Sbjct: 420 TTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVPSIS 465
>SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05)
Length = 1960
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = -3
Query: 277 TTLTLSL*FVQYPSIFEGSFTHFXGLLLELXDGTFVNTTTFVDQVS 140
TT+T S YPS+ + +F + D T N TT V +S
Sbjct: 236 TTITPSPNITSYPSLMTSAVGNFTSAKSVVFDSTTPNATTLVPSIS 281
Score = 28.7 bits (61), Expect = 4.4
Identities = 18/77 (23%), Positives = 32/77 (41%)
Frame = -3
Query: 370 VLDEISVSRSINDGNIVLXSFELPESNIDCDTTLTLSL*FVQYPSIFEGSFTHFXGLLLE 191
V I ++ + N V + +++ TT+T S YPS+ + + +F
Sbjct: 1009 VASSIQLNITSNTTMAVNDTLRTASTSVVFPTTITPSPNITSYPSLMKSAVGNFTSATSV 1068
Query: 190 LXDGTFVNTTTFVDQVS 140
+ D T N T V +S
Sbjct: 1069 VFDSTTPNATRLVPSIS 1085
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,767,315
Number of Sequences: 59808
Number of extensions: 327847
Number of successful extensions: 680
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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