Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_K08
         (654 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...   328   2e-92
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...   318   2e-89
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...   264   4e-73
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...   231   3e-63
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    34   0.001
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    24   1.1  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   2.6  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    23   3.4  

>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score =  328 bits (807), Expect = 2e-92
 Identities = 158/170 (92%), Positives = 158/170 (92%)
 Frame = +2

Query: 143 HLIYKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETXKY 322
           HLIYKCGGIDKRTI KFEKEA EMGKGSFKYAWVLDKLKAERERGITIDIALWKFET KY
Sbjct: 26  HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKY 85

Query: 323 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEXGISKNGQTREHALLAFTLGV 502
           YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFE GISKNGQTREHALLAFTLGV
Sbjct: 86  YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV 145

Query: 503 KQLIVXVNKMDSTEPPYSEPXFXEIXXEVSSYIKXIGYNPXAVAFVPISG 652
           KQLIV VNKMDSTEPPYSE  F EI  EVSSYIK IGYNP AVAFVPISG
Sbjct: 146 KQLIVGVNKMDSTEPPYSETRFEEIKKEVSSYIKKIGYNPAAVAFVPISG 195



 Score = 54.8 bits (126), Expect = 7e-10
 Identities = 25/27 (92%), Positives = 25/27 (92%)
 Frame = +1

Query: 67  MGKEKTHINIVVIGHVDSGKSTTTGSL 147
           MGKEK HINIVVIGHVDSGKSTTTG L
Sbjct: 1   MGKEKIHINIVVIGHVDSGKSTTTGHL 27


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score =  318 bits (782), Expect = 2e-89
 Identities = 153/170 (90%), Positives = 155/170 (91%)
 Frame = +2

Query: 143 HLIYKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETXKY 322
           HLIYKCGGIDKRTI KFEKEA EMGKGSFKYAWVLDKLKAERERGITIDIALWKFET KY
Sbjct: 26  HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETAKY 85

Query: 323 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEXGISKNGQTREHALLAFTLGV 502
           YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG GEFE GISKNGQTREHALLAFTLGV
Sbjct: 86  YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGIGEFEAGISKNGQTREHALLAFTLGV 145

Query: 503 KQLIVXVNKMDSTEPPYSEPXFXEIXXEVSSYIKXIGYNPXAVAFVPISG 652
           KQLIV VNKMD T+PPYSE  F EI  EVSSYIK IGYN  +VAFVPISG
Sbjct: 146 KQLIVGVNKMDMTDPPYSEARFEEIKKEVSSYIKKIGYNTASVAFVPISG 195



 Score = 54.8 bits (126), Expect = 7e-10
 Identities = 25/27 (92%), Positives = 25/27 (92%)
 Frame = +1

Query: 67  MGKEKTHINIVVIGHVDSGKSTTTGSL 147
           MGKEK HINIVVIGHVDSGKSTTTG L
Sbjct: 1   MGKEKIHINIVVIGHVDSGKSTTTGHL 27


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score =  264 bits (648), Expect = 4e-73
 Identities = 128/138 (92%), Positives = 128/138 (92%)
 Frame = +2

Query: 239 WVLDKLKAERERGITIDIALWKFETXKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 418
           WVLDKLKAERERGITIDIALWKFET KYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA
Sbjct: 1   WVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 60

Query: 419 AGTGEFEXGISKNGQTREHALLAFTLGVKQLIVXVNKMDSTEPPYSEPXFXEIXXEVSSY 598
           AGTGEFE GISKNGQTREHALLAFTLGVKQLIV VNKMDSTEPPYSE  F EI  EVSSY
Sbjct: 61  AGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSETRFEEIKKEVSSY 120

Query: 599 IKXIGYNPXAVAFVPISG 652
           IK IGYNP AVAFVPISG
Sbjct: 121 IKKIGYNPAAVAFVPISG 138


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score =  231 bits (566), Expect = 3e-63
 Identities = 112/122 (91%), Positives = 112/122 (91%)
 Frame = +2

Query: 287 DIALWKFETXKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEXGISKNGQT 466
           DIALWKFET KYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFE GISKNGQT
Sbjct: 1   DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQT 60

Query: 467 REHALLAFTLGVKQLIVXVNKMDSTEPPYSEPXFXEIXXEVSSYIKXIGYNPXAVAFVPI 646
           REHALLAFTLGVKQLIV VNKMDSTEPPYSE  F EI  EVSSYIK IGYNP AVAFVPI
Sbjct: 61  REHALLAFTLGVKQLIVGVNKMDSTEPPYSETRFEEIKKEVSSYIKKIGYNPAAVAFVPI 120

Query: 647 SG 652
           SG
Sbjct: 121 SG 122


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 34.3 bits (75), Expect = 0.001
 Identities = 26/70 (37%), Positives = 33/70 (47%)
 Frame = +2

Query: 326 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEXGISKNGQTREHALLAFTLGVK 505
           VT +D PGH  FI     G    D  VL+VAA  G  E       QT +   +A    V 
Sbjct: 195 VTFLDTPGHAAFISMRHRGAHITDIVVLVVAADDGVKE-------QTLQSIEMAKDAKV- 246

Query: 506 QLIVXVNKMD 535
            +IV +NK+D
Sbjct: 247 PIIVAINKID 256



 Score = 26.2 bits (55), Expect = 0.28
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 79  KTHINIVVIGHVDSGKSTTTGSL 147
           K H  + ++GHVD GK+T   +L
Sbjct: 143 KRHPIVTIMGHVDHGKTTLLDAL 165


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = +1

Query: 88  INIVVIGHVDSGKST 132
           INI  IGHV  GKST
Sbjct: 43  INIGTIGHVAHGKST 57


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 311 TXKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 412
           T KYY    D P +  FIKN+   ++ +D   LI
Sbjct: 294 TMKYYDYGADFPFNFAFIKNVSRDSNSSDFKKLI 327


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 311 TXKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 412
           T KYY    D P +  FIKN+   ++ +D   L+
Sbjct: 294 TMKYYDYGADFPFNFAFIKNVSRDSNSSDFKKLV 327


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,928
Number of Sequences: 438
Number of extensions: 2940
Number of successful extensions: 15
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)