Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_K07
         (656 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A5.13 |||GTP cyclohydrolase |Schizosaccharomyces pombe|chr...   103   2e-23
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy...    27   2.4  
SPBC1271.11 |||tricarboxylate transporter |Schizosaccharomyces p...    27   3.1  
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr...    26   4.2  
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce...    26   5.5  
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c...    25   7.3  
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc...    25   9.6  

>SPAC17A5.13 |||GTP cyclohydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 235

 Score =  103 bits (247), Expect = 2e-23
 Identities = 46/75 (61%), Positives = 59/75 (78%)
 Frame = +1

Query: 430 MANSYRLLLTGLGEDPERAGLLXTPERAAKAMLFFTKGYDQSLEEVLNNAIFDEXTDXMV 609
           ++N+   +L  LGEDPER GLL TPER AKAML+FTKGY+Q+L EV+N A+F E  + MV
Sbjct: 55  ISNAISTILECLGEDPERQGLLGTPERYAKAMLYFTKGYEQNLTEVINEAVFQEDHEEMV 114

Query: 610 VVXDIXMFSMCEHHL 654
           +V DI +FS+CEHHL
Sbjct: 115 IVRDIDVFSLCEHHL 129


>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 800

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 14/44 (31%), Positives = 18/44 (40%)
 Frame = +3

Query: 261 NKMKELNGVSTSQCVETNGALTFTKKXNDNGHENCTFHHDLXLD 392
           N  K+L G+     V  NG L      + NGH      +DL  D
Sbjct: 359 NTSKQLQGLVQFSSVSPNGELLLMSSSSFNGHSVSVQEYDLTKD 402


>SPBC1271.11 |||tricarboxylate transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 258

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -3

Query: 597 RVFIEDGVVQNLFQALVVSFREEEHSFGGTFGR 499
           R  I    V  +FQ+++ ++R+  HSF G  GR
Sbjct: 110 RAQISKTSVSQIFQSMIHNYRDLWHSFKGMCGR 142


>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 703

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 20/78 (25%), Positives = 39/78 (50%)
 Frame = -1

Query: 395 VVQXQVMVEGAVLVTIVIXLLGKSESSVSLDALAG*NSIQLLHFVLRIENYNREQINRLR 216
           V+   +  +G+V+  +      K ES+++  ++A  NS   +  +L+    N+E IN   
Sbjct: 394 VLLNNIREDGSVISALAQNSFHKVESALANVSVAWANSTNQI--ILK----NQENINNNM 447

Query: 215 FGALFNVTVTATKIGNGF 162
           FG++ N T++     N F
Sbjct: 448 FGSIHNTTLSLNSTLNTF 465


>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +1

Query: 22  CFERRPR*TVTALLD-NLSPFGRKIYVNLITSLSGFLSLQ 138
           CF  R + ++ ALL    S F ++ YV L   L+GFL LQ
Sbjct: 621 CFPLREKFSIPALLSFRSSNFSKRPYV-LSPILNGFLKLQ 659


>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +2

Query: 446 GFYSPAWGRTLKGQGS*XRPNVPPKLCSSSRKDTT 550
           G Y+ A       QG+   P+VPP + + S+ +TT
Sbjct: 616 GMYAKALDAIAFHQGALVTPSVPPVIATVSKTNTT 650


>SPAC31A2.14 |||WD repeat protein, human WRDR48
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = -1

Query: 563 SSKLWSYPFVKKSIALAARSGVFKSPALSGSSPRPVSRS 447
           SSK     F+K S+  AA S VF S   S +SP+ +S++
Sbjct: 687 SSKSLQTDFMKASVERAASSRVF-STGTSVTSPQALSKT 724


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,516,391
Number of Sequences: 5004
Number of extensions: 49018
Number of successful extensions: 125
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)