Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P03_F_K07
(656 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0503 - 4196989-4197425,4197507-4199436,4200910-4201017 30 1.9
09_04_0190 - 15443764-15443838,15445360-15445458,15446396-154468... 29 2.5
01_06_0909 - 32903520-32903828,32903899-32903973,32904068-329042... 29 2.5
01_06_0907 - 32897168-32897476,32897547-32897621,32897716-328978... 29 2.5
07_03_1381 - 26166673-26166747,26166972-26167544 29 4.3
03_05_0065 + 20450814-20452748 28 7.5
11_02_0100 - 8298182-8298448,8298607-8298747,8299002-8299237,829... 27 9.9
10_06_0165 + 11380807-11383585,11383628-11383734,11383782-11384018 27 9.9
02_04_0566 - 23912651-23913862 27 9.9
>05_01_0503 - 4196989-4197425,4197507-4199436,4200910-4201017
Length = 824
Score = 29.9 bits (64), Expect = 1.9
Identities = 19/59 (32%), Positives = 29/59 (49%)
Frame = +1
Query: 403 PPGXALLPDMANSYRLLLTGLGEDPERAGLLXTPERAAKAMLFFTKGYDQSLEEVLNNA 579
PP A+ P+ A S+ + L + G TPE AA+A L G DQ ++ + +A
Sbjct: 461 PPSPAMFPEDAESWNVQLFRSIDGGAAFGFPDTPEDAARAGL--VSGKDQIIDRSIQDA 517
>09_04_0190 -
15443764-15443838,15445360-15445458,15446396-15446891,
15449436-15449479,15449999-15450104,15450243-15450314,
15450474-15450588,15451182-15451407
Length = 410
Score = 29.5 bits (63), Expect = 2.5
Identities = 21/63 (33%), Positives = 34/63 (53%)
Frame = +3
Query: 165 AIADLCSCHGDVKKRAKTQSIYLFAIIIFNS*NKMKELNGVSTSQCVETNGALTFTKKXN 344
AI D C+ + +KK K L +I+ + ++ E V S+CV+T G TF+K+ N
Sbjct: 73 AIYDNCAVYKKLKKILKKD---LSDLIVQLNGSEWMETYIVCYSRCVKTAGFSTFSKETN 129
Query: 345 DNG 353
+G
Sbjct: 130 ISG 132
>01_06_0909 - 32903520-32903828,32903899-32903973,32904068-32904235,
32904508-32904565,32904638-32904879,32905145-32905216,
32905865-32905943,32906734-32907062,32907137-32907256,
32907355-32907429,32908260-32908342,32908942-32908984,
32909271-32909429,32910203-32910281,32910685-32910755,
32910847-32910946,32911023-32911229,32911348-32911442,
32912362-32912436,32912621-32912713,32913078-32913182,
32913851-32913921,32914943-32915096,32916035-32916098,
32916717-32916800,32917543-32917589,32918352-32918411,
32918521-32918592
Length = 1062
Score = 29.5 bits (63), Expect = 2.5
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +1
Query: 397 DRPPGXALLPDMANSYRLLLTGLGEDPERAGLLXTPERAAKAMLFFT-KGYDQSLEEVLN 573
DRP D+ +S++ L DP+ A ++ PER + L+FT + + SL VL
Sbjct: 835 DRPNSNKKSIDLDDSHKETKYCL--DPKYANVME-PERRVRTRLYFTSESHIHSLMNVLR 891
Query: 574 NAIFDEXTD 600
FDE D
Sbjct: 892 YCNFDESMD 900
>01_06_0907 -
32897168-32897476,32897547-32897621,32897716-32897883,
32898156-32898213,32898286-32898527,32898630-32898726,
32898827-32898921
Length = 347
Score = 29.5 bits (63), Expect = 2.5
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +1
Query: 397 DRPPGXALLPDMANSYRLLLTGLGEDPERAGLLXTPERAAKAMLFFT-KGYDQSLEEVLN 573
DRP D+ +S++ L DP+ A ++ PER + L+FT + + SL VL
Sbjct: 120 DRPNSNKKSIDLDDSHKETKYCL--DPKYANVME-PERRVRTRLYFTSESHIHSLMNVLR 176
Query: 574 NAIFDEXTD 600
FDE D
Sbjct: 177 YCNFDESMD 185
>07_03_1381 - 26166673-26166747,26166972-26167544
Length = 215
Score = 28.7 bits (61), Expect = 4.3
Identities = 18/50 (36%), Positives = 24/50 (48%)
Frame = +3
Query: 396 RPPTRXGVVTGHG*LIQASTHRPGGGP*KGRALEXARTCRQSYALLHERI 545
R P R VVT HG ++ A+ GG P L +RT R Y+ R+
Sbjct: 73 RAPCRVVVVTSHGAIVAAAA-AGGGWPAVSSRLPMSRTRRGGYSRREGRV 121
>03_05_0065 + 20450814-20452748
Length = 644
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -1
Query: 488 PALSGSSPRPVSRSLYELAMSGNNAXPGGRS 396
P + GS PRP + + A + + A GGRS
Sbjct: 9 PTVPGSKPRPAAATSVSTAATADAAVAGGRS 39
>11_02_0100 -
8298182-8298448,8298607-8298747,8299002-8299237,
8299251-8299362
Length = 251
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +2
Query: 239 DYNFQFVKQNEGAEWSFNQPVRRD 310
DY FQF+K+N G N P R +
Sbjct: 85 DYAFQFIKRNGGITTESNYPYRAE 108
>10_06_0165 + 11380807-11383585,11383628-11383734,11383782-11384018
Length = 1040
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +3
Query: 492 LEXARTCRQSYALLHERIRPKLGRGSEQRHL 584
L RT SY LLH I P +GR S ++L
Sbjct: 79 LTYLRTLDLSYNLLHGEIPPTIGRLSRMKYL 109
>02_04_0566 - 23912651-23913862
Length = 403
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = -1
Query: 443 YELAMSGNNAXPGGRSVVQXQVMVEGAVLVTIVIXLLGKSESSVSLDAL 297
Y A + N PGGRS MV G V +++ + +S + + L
Sbjct: 190 YNYAFAANRPRPGGRSAADVGRMVTGVVESVVLVPEVVRSVVGAAREVL 238
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,203,530
Number of Sequences: 37544
Number of extensions: 365469
Number of successful extensions: 852
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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