Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_K07
         (656 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5865| Best HMM Match : No HMM Matches (HMM E-Value=.)              107   8e-24
SB_46249| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  

>SB_5865| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 324

 Score =  107 bits (257), Expect = 8e-24
 Identities = 44/75 (58%), Positives = 62/75 (82%)
 Frame = +1

Query: 430 MANSYRLLLTGLGEDPERAGLLXTPERAAKAMLFFTKGYDQSLEEVLNNAIFDEXTDXMV 609
           ++ +Y  +L+ +GED +R GLL TPERAAKAML+FTKGY++ ++E+LN+A+FDE  D +V
Sbjct: 50  ISKAYETILSNIGEDKDRQGLLKTPERAAKAMLYFTKGYEEKVQEILNDAVFDEDHDELV 109

Query: 610 VVXDIXMFSMCEHHL 654
           +V DI MFS+CEHHL
Sbjct: 110 IVKDIEMFSLCEHHL 124


>SB_46249| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 834

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 18/42 (42%), Positives = 23/42 (54%)
 Frame = -1

Query: 563 SSKLWSYPFVKKSIALAARSGVFKSPALSGSSPRPVSRSLYE 438
           SS L+  P + KS  L   S  +KS +L  SSP   S SLY+
Sbjct: 634 SSSLYESPPLYKSSPLYKSSPPYKSSSLYRSSPLCKSSSLYK 675


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,409,363
Number of Sequences: 59808
Number of extensions: 398484
Number of successful extensions: 857
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 854
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)