Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_K07
         (656 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    24   1.5  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   1.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.6  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   5.9  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   5.9  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   7.8  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   7.8  

>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = -3

Query: 576 VVQNLFQALVVSFREEEHSFGGTFGRXQEPCPFRVLPQAGE 454
           V+  L + ++++F+EE  S      R +  CP    P+ G+
Sbjct: 317 VLDKLARIVLLNFQEERRSEPVEPPRRKNNCPLHCKPELGQ 357


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
 Frame = -1

Query: 77  GLRLSKRAVT--VXRGRRSKQNGSNN 6
           G R  +  +T  + RGR S  NGSNN
Sbjct: 295 GSRFDEERLTLRIHRGRGSVHNGSNN 320


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +1

Query: 85   RKIYVNLITSLSGFLSLQSRTPWVQQKPLP 174
            R +  ++ +S+    S   RT W QQ+P P
Sbjct: 1328 RPLSEHIYSSIDSDYSTLERTAWRQQQPPP 1357


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = +1

Query: 49  VTALLDNLSPFGRKIYVNLITSLSGFLSLQS 141
           V  LLD  SPFGR    N   +    L+L S
Sbjct: 582 VLYLLDRFSPFGRFKLANTDGTEEDALNLSS 612


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +1

Query: 181 VAVTVTLKSAPKRSRFICS 237
           +AV V ++  P+R R +C+
Sbjct: 101 IAVCVCMRKCPRRHRPVCA 119


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -2

Query: 484 PFQGPPPG 461
           P QGPPPG
Sbjct: 42  PSQGPPPG 49


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -1

Query: 545 YPFVKKSIALAARSGVFKSPALSGSSPRPVSRSLYELAMSG 423
           Y  V  S A + R     + + + +SPRP S +   L +SG
Sbjct: 816 YLMVGNSPASSPRYLSAAATSSTSTSPRPASSTAATLVLSG 856


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,327
Number of Sequences: 438
Number of extensions: 3761
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)