Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_K07
         (656 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g07270.2 68416.m00865 GTP cyclohydrolase I identical to GTP c...    48   4e-06
At3g07270.1 68416.m00866 GTP cyclohydrolase I identical to GTP c...    48   4e-06
At5g52860.1 68418.m06561 ABC transporter family protein                30   1.2  
At2g41640.1 68415.m05145 expressed protein contains Pfam domain,...    30   1.2  
At3g22990.1 68416.m02899 expressed protein                             29   2.7  
At3g17860.2 68416.m02277 expressed protein                             29   2.7  
At1g77460.1 68414.m09020 C2 domain-containing protein / armadill...    29   2.7  
At3g60490.1 68416.m06765 AP2 domain-containing transcription fac...    29   3.6  
At3g28920.1 68416.m03611 zinc finger homeobox family protein / Z...    27   8.3  
At3g15380.1 68416.m01950 choline transporter-related contains we...    27   8.3  
At1g75460.1 68414.m08765 ATP-dependent protease La (LON) domain-...    27   8.3  

>At3g07270.2 68416.m00865 GTP cyclohydrolase I identical to GTP
           cyclohydrolase I GI:19909132 from [Arabidopsis
           thaliana]; contains Pfam profile: PF01227 GTP
           cyclohydrolase I
          Length = 466

 Score = 48.4 bits (110), Expect = 4e-06
 Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 11/81 (13%)
 Frame = +1

Query: 436 NSYRLLLTGLGEDPERAGLLXTPERAAKAMLFFTKGYDQSLEEVLNNAIFDE-------- 591
           ++ +LLL GL ED  R G+  TP R AKA+   T+GY Q +++ + +A+F E        
Sbjct: 37  DAVKLLLQGLHEDVNREGIKKTPFRVAKALREGTRGYKQKVKDYVQSALFPEAGLDEGVG 96

Query: 592 ---XTDXMVVVXDIXMFSMCE 645
                  +VVV D+  +S CE
Sbjct: 97  QAGGVGGLVVVRDLDHYSYCE 117



 Score = 41.5 bits (93), Expect = 5e-04
 Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
 Frame = +1

Query: 424 PDMANSYRLLLTGLGEDPERAGLLXTPERAAKAMLFFTK-GYDQSLEEVLNNAIFDEXTD 600
           P+M ++   +L  LGEDP R  L+ TP R  K ML F +   +  L       +  E  +
Sbjct: 268 PEMVSAVVSILKSLGEDPLRKELIATPTRFLKWMLNFQRTNLEMKLNSFNPAKVNGEVKE 327

Query: 601 XMV-VVXDIXMFSMCEHHL 654
             +    ++  +SMCEHHL
Sbjct: 328 KRLHCELNMPFWSMCEHHL 346


>At3g07270.1 68416.m00866 GTP cyclohydrolase I identical to GTP
           cyclohydrolase I GI:19909132 from [Arabidopsis
           thaliana]; contains Pfam profile: PF01227 GTP
           cyclohydrolase I
          Length = 466

 Score = 48.4 bits (110), Expect = 4e-06
 Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 11/81 (13%)
 Frame = +1

Query: 436 NSYRLLLTGLGEDPERAGLLXTPERAAKAMLFFTKGYDQSLEEVLNNAIFDE-------- 591
           ++ +LLL GL ED  R G+  TP R AKA+   T+GY Q +++ + +A+F E        
Sbjct: 37  DAVKLLLQGLHEDVNREGIKKTPFRVAKALREGTRGYKQKVKDYVQSALFPEAGLDEGVG 96

Query: 592 ---XTDXMVVVXDIXMFSMCE 645
                  +VVV D+  +S CE
Sbjct: 97  QAGGVGGLVVVRDLDHYSYCE 117



 Score = 41.5 bits (93), Expect = 5e-04
 Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
 Frame = +1

Query: 424 PDMANSYRLLLTGLGEDPERAGLLXTPERAAKAMLFFTK-GYDQSLEEVLNNAIFDEXTD 600
           P+M ++   +L  LGEDP R  L+ TP R  K ML F +   +  L       +  E  +
Sbjct: 268 PEMVSAVVSILKSLGEDPLRKELIATPTRFLKWMLNFQRTNLEMKLNSFNPAKVNGEVKE 327

Query: 601 XMV-VVXDIXMFSMCEHHL 654
             +    ++  +SMCEHHL
Sbjct: 328 KRLHCELNMPFWSMCEHHL 346


>At5g52860.1 68418.m06561 ABC transporter family protein 
          Length = 589

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 30/118 (25%), Positives = 48/118 (40%), Gaps = 2/118 (1%)
 Frame = +1

Query: 34  RPR*TVTALLDNLSPF--GRKIYVNLITSLSGFLSLQSRTPWVQQKPLPIFVAVTVTLKS 207
           +P   + +++D L     G  +Y   + SL GFL  +  T   Q   L   + +   L+ 
Sbjct: 219 QPSFKILSIIDRLLLLSKGTVVYHGRLDSLEGFLLFKGFTVPPQLNSLEYAMEILQELRE 278

Query: 208 APKRSRFICSRL*FSIRKTK*RS*MEFQPASASRLTELSLLPRRXMTMVTRTAPSTMT 381
           +   +         SI   K R          SR+TE+SLL RR   ++ RT    +T
Sbjct: 279 SDGNTDATALP---SIENRKQREKQSIVRYRKSRITEISLLARRFWKIIYRTRQLLLT 333


>At2g41640.1 68415.m05145 expressed protein contains Pfam domain,
           PF04577: Protein of unknown function (DUF563)
          Length = 500

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
 Frame = +3

Query: 171 ADLCSCHGDVKKRAKTQSIYLFAIIIFNS--*NKMKELNGVSTSQCVETNGALT-FTKKX 341
           +D+C   GDV+  + + SI+LF     N+    K+K       +  ++T   L   TK  
Sbjct: 108 SDICVMKGDVRTNSASSSIFLFTSSTNNNTKPEKIKPYTRKWETSVMDTVQELNLITKDS 167

Query: 342 NDNGHENCTFHHDL 383
           N +    C  +HD+
Sbjct: 168 NKSSDRVCDVYHDV 181


>At3g22990.1 68416.m02899 expressed protein
          Length = 460

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = +1

Query: 421 LPDMANSYRLLLTGLGEDPERAGLLXTPERAAKAMLFFTKGYDQSLEEVL 570
           +P++     ++L  L  +P+  GLL   E A   +LF    Y  S   +L
Sbjct: 391 VPEVCRKAAMILENLVSEPQNRGLLLAYENAFAELLFQEGKYSDSFARIL 440


>At3g17860.2 68416.m02277 expressed protein
          Length = 339

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
 Frame = +2

Query: 242 YNFQFVKQNEGAEWSFNQPVRRD*RSSHFY-----QEEX*QWSRELHLP 373
           Y+F FV  N G  WSF+  V     SS F      QE+  + S   HLP
Sbjct: 10  YSFSFVAPNRGMNWSFSNKVSAS--SSQFLSFRPTQEDRHRKSGNYHLP 56


>At1g77460.1 68414.m09020 C2 domain-containing protein /
           armadillo/beta-catenin repeat family protein similar to
           CCLS 65 [Silene latifolia] GI:2570102; contains Pfam
           profiles PF00514: Armadillo/beta-catenin-like repeat,
           PF00168: C2 domain
          Length = 2110

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = -3

Query: 621 IXNDHHXVRVFIEDGVVQNLFQALVVSFREEEHSFGGTFGRXQEPC 484
           I NDH  +++FI +GVV  L+  L +   +++   G   G  +  C
Sbjct: 129 ISNDHIGMKIFITEGVVPTLWDQLSLKGNQDKVVEGYVTGALRNLC 174


>At3g60490.1 68416.m06765 AP2 domain-containing transcription factor
           TINY, putative similar to transcription factor TINY
           (GI:1246403)  [Arabidopsis thaliana]
          Length = 256

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -1

Query: 527 SIALAARSGVFKSPALSGSSPRPVSRSLYELAMSGNNA 414
           ++A+   SG    P LSG  PRPVS S  ++  +   A
Sbjct: 114 ALAIKGNSGFLNFPELSGLLPRPVSCSPKDIQAAATKA 151


>At3g28920.1 68416.m03611 zinc finger homeobox family protein /
           ZF-HD homeobox family protein contains Pfam PF04770:
           ZF-HD protein dimerisation region; contains Pfam
           TIGR01566: ZF-HD homeobox protein Cys/His-rich domain;
           contains TIGRFAM TIGR01565: homeobox domain, ZF-HD
           class; similar to ZF-HD homeobox protein (GI:13277220)
           [Flaveria bidentis]
          Length = 312

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -1

Query: 479 SGSSPRPVSRSLYELAMSGNN 417
           + SSP P+S S   LA+SGNN
Sbjct: 148 NSSSPPPISSSYMLLALSGNN 168


>At3g15380.1 68416.m01950 choline transporter-related contains weak
           similarity to CD92 protein [Homo sapiens]
           gi|16945323|emb|CAC82175
          Length = 700

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +1

Query: 316 ELSLLPRRXMTMVTRTAPSTMTXNWTTDRPPG 411
           EL L   R + ++   APS  T NW  D P G
Sbjct: 106 ELKLANARTICLLDCPAPSDDTLNWVCDYPDG 137


>At1g75460.1 68414.m08765 ATP-dependent protease La (LON)
           domain-containing protein weak similarity to SP|P36774
           ATP-dependent protease La 2 (EC 3.4.21.53) {Myxococcus
           xanthus}; contains Pfam profile PF02190: ATP-dependent
           protease La (LON) domain
          Length = 278

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = +1

Query: 334 RRXMTMVTRTAPSTM-TXNWTTDRPPGXALLPDMANSYRLLL 456
           R  +T V RT P  +    W  DRP G   L  +AN   +L+
Sbjct: 151 RFRVTNVVRTKPYLVGEVTWLEDRPSGEENLDSLANEVEVLM 192


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,484,584
Number of Sequences: 28952
Number of extensions: 273866
Number of successful extensions: 611
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 609
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)