Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_K05
         (643 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    26   0.23 
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    26   0.23 
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    26   0.23 
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    24   1.2  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    22   3.7  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    22   3.7  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    22   3.7  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    22   4.9  

>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 26.2 bits (55), Expect = 0.23
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = -1

Query: 349 NVTGASGNSMSRRTCLDSPTFNTATGSFTASCSDMASTCITFNSXGLASGPN 194
           N+ G + + M       SPT  TA  S T +  ++++T   F S G    PN
Sbjct: 235 NIHGMAPSVMYPHLNRSSPTTATAIASATVTIQNVSNTIPPFASRGSMHFPN 286


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 26.2 bits (55), Expect = 0.23
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = -1

Query: 349 NVTGASGNSMSRRTCLDSPTFNTATGSFTASCSDMASTCITFNSXGLASGPN 194
           N+ G + + M       SPT  TA  S T +  ++++T   F S G    PN
Sbjct: 183 NIHGMAPSVMYPHLNRSSPTTATAIASATVTIQNVSNTIPPFASRGSMHFPN 234


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 26.2 bits (55), Expect = 0.23
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = -1

Query: 349 NVTGASGNSMSRRTCLDSPTFNTATGSFTASCSDMASTCITFNSXGLASGPN 194
           N+ G + + M       SPT  TA  S T +  ++++T   F S G    PN
Sbjct: 366 NIHGMAPSVMYPHLNRSSPTTATAIASATVTIQNVSNTIPPFASRGSMHFPN 417


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 15/60 (25%), Positives = 26/60 (43%)
 Frame = -1

Query: 442 PFPPYXQILQAEHQGDGVQLSVLAPXP*TRVNVTGASGNSMSRRTCLDSPTFNTATGSFT 263
           P P   +I  AE        ++ +P P +R +  G++ +SM    CL++   N      T
Sbjct: 207 PKPTVPKIPPAEFPTTSSSSALESPNPASRSSCLGSNTSSMLSLNCLNTGRTNFTNKQLT 266


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
 Frame = +2

Query: 68  NHHDGRVFLWCHPFIIT--SVRDMGSRG 145
           NH  GR+   CH  + T   ++D  +RG
Sbjct: 276 NHQRGRILGGCHILVATPGRLKDFVNRG 303


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +3

Query: 132 WDPEAKAEYPRSNKLVI 182
           W P  KAE P SN + I
Sbjct: 95  WVPGGKAEVPPSNPIYI 111


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = -1

Query: 442 PFPPYXQILQAEHQGDGVQLSVLAPXP*TRVNVTGASGNSMSRRTCL 302
           P P   +I  AE        ++ +P P +R +  G++ +SM    CL
Sbjct: 207 PKPTVPKIPPAEFPTTSSSSALESPDPASRSSCLGSNTSSMLSLNCL 253


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 9/28 (32%), Positives = 10/28 (35%)
 Frame = +1

Query: 109 HHHISQRHGIQRQKQNTHAATSSSFVKH 192
           HHH       Q    N H A + S   H
Sbjct: 323 HHHAGHHIHAQHHVVNHHVAANGSLKHH 350


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,243
Number of Sequences: 336
Number of extensions: 2549
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16448590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)