Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P03_F_K05
(643 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1604.05 |pgi1||glucose-6-phosphate isomerase |Schizosaccharo... 30 0.33
SPAC7D4.09c |||steroid dehydrogenase |Schizosaccharomyces pombe|... 29 0.75
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1... 27 1.7
SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces po... 27 2.3
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce... 27 2.3
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces... 25 7.0
SPAPB17E12.02 |yip12|yip1, yip1-b|SMN family protein Yip12|Schiz... 25 7.0
SPAC19B12.12c |yip11|yip1, yip1-a|SMN family protein Yip11|Schiz... 25 7.0
SPAC23C11.04c |pnk1||DNA kinase/phosphatase Pnk1|Schizosaccharom... 25 9.3
>SPBC1604.05 |pgi1||glucose-6-phosphate isomerase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 29.9 bits (64), Expect = 0.33
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = -1
Query: 529 ACASLLLXFYXHLX*XENHLLXXHXTFLXPFPPYXQILQAEHQGDGVQLS 380
A A+L+ +Y + HL+ + +L FP Y Q L E G + S
Sbjct: 323 ALAALISIWYSDFFGAQTHLVAPYDQYLHRFPAYLQQLSMESNGKAITRS 372
>SPAC7D4.09c |||steroid dehydrogenase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 274
Score = 28.7 bits (61), Expect = 0.75
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 307 MYVWTLNSQMRLLHLLLFRXSGPVHLIGHHLLG 405
+ ++ +++ RL L FR SG L GH+LLG
Sbjct: 110 LLIYEIHTLRRLYENLRFRKSGSKMLAGHYLLG 142
>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1023
Score = 27.5 bits (58), Expect = 1.7
Identities = 19/62 (30%), Positives = 28/62 (45%)
Frame = +3
Query: 201 PDAKPXELNVIQVEAMSLQEAVKLPVAVLKVGESRHVRLDIEFPDAPVTFTLVQGFGAST 380
P +KP + N + + LQ + KLP L VGE I+ P+ V+ T +S
Sbjct: 355 PVSKPSKPNTLTEDEKPLQ-STKLPGNSLTVGELYQEPKSIQLPELSVSRTTYSAQSSSV 413
Query: 381 LN 386
N
Sbjct: 414 KN 415
>SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 674
Score = 27.1 bits (57), Expect = 2.3
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +3
Query: 222 LNVIQVEAMSLQ--EAVKLPVAVLKVGESRHVRLDIEFPDAPVTFTLVQGFG 371
LN IQ +SL+ + + V+ + HVR++ F + ++ LV+G G
Sbjct: 556 LNEIQKSTLSLKSLQIGTILQEVMTMAREHHVRIEANFANTVLSILLVEGAG 607
>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1008
Score = 27.1 bits (57), Expect = 2.3
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = -1
Query: 355 RVNV-TGASGNSMSRRTCLDSPTFNTATGSFTASCSDMAST 236
R NV T ++ N + + + +PT +T TGS ++ S M +T
Sbjct: 57 RPNVSTSSTSNEVRKSVPVGNPTVHTKTGSSSSPASKMRNT 97
>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 565
Score = 25.4 bits (53), Expect = 7.0
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 8/86 (9%)
Frame = -1
Query: 403 QGDGVQLSVL--APXP*TRVNVTGA--SGNSMSRRTCLDSP----TFNTATGSFTASCSD 248
+ GV L L AP P ++NV G+ S ++ S P T N++TGSFT +
Sbjct: 251 KSSGVNLMPLSNAPSPPKQMNVVGSLPSSSNTSPNHLASVPNRGLTSNSSTGSFTKYTNG 310
Query: 247 MASTCITFNSXGLASGPNNA*RMTSL 170
+++ + +S P+ + TSL
Sbjct: 311 SSNSLYSNSSMQTPYLPSKSNSSTSL 336
>SPAPB17E12.02 |yip12|yip1, yip1-b|SMN family protein
Yip12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 235
Score = 25.4 bits (53), Expect = 7.0
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = -3
Query: 176 ELVAAWVFCFCLWIP 132
+L + W+FCFC +P
Sbjct: 170 DLQSQWIFCFCYKLP 184
>SPAC19B12.12c |yip11|yip1, yip1-a|SMN family protein
Yip11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 235
Score = 25.4 bits (53), Expect = 7.0
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = -3
Query: 176 ELVAAWVFCFCLWIP 132
+L + W+FCFC +P
Sbjct: 170 DLQSQWIFCFCYKLP 184
>SPAC23C11.04c |pnk1||DNA kinase/phosphatase
Pnk1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 421
Score = 25.0 bits (52), Expect = 9.3
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +3
Query: 138 PEAKAEYPRSNKLVIRQALLGPDAKPXELNVIQVEAMSLQEAVKLPVAV 284
P+ KA Y + LVI G KP + Q++ ++ E++ LP+ +
Sbjct: 104 PKLKALYQDNYSLVIFSNQNGIPRKPSAGHTFQMKIRAIFESLDLPIVL 152
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,256,231
Number of Sequences: 5004
Number of extensions: 39011
Number of successful extensions: 105
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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