Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_K05
         (643 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016445-9|AAC69061.1|  156|Caenorhabditis elegans Hypothetical ...    30   1.2  
U02289-1|AAA18934.1| 1439|Caenorhabditis elegans GTPase-activati...    28   4.9  
L16687-1|AAK71357.2| 1317|Caenorhabditis elegans Hypothetical pr...    28   4.9  

>AF016445-9|AAC69061.1|  156|Caenorhabditis elegans Hypothetical
           protein T05B4.13 protein.
          Length = 156

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 16/37 (43%), Positives = 23/37 (62%)
 Frame = -1

Query: 328 NSMSRRTCLDSPTFNTATGSFTASCSDMASTCITFNS 218
           N+  +RTC   P+  TA+ S TAS S   STC ++N+
Sbjct: 87  NTYCQRTCGRCPSSTTASSSSTASSS---STCTSYNA 120


>U02289-1|AAA18934.1| 1439|Caenorhabditis elegans GTPase-activating
           protein protein.
          Length = 1439

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +1

Query: 34  NVLLKISTKLVKSS*RTSFSMVSPFHHHISQRHGIQRQKQNTHAATSSS 180
           N  ++     V SS +T  +  S FHHH SQ  G  R  +N  A T+++
Sbjct: 690 NKKMETDPSTVPSSSQTMATTSSSFHHHSSQA-GPSRDIENGEAPTATA 737


>L16687-1|AAK71357.2| 1317|Caenorhabditis elegans Hypothetical
           protein C04D8.1 protein.
          Length = 1317

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +1

Query: 34  NVLLKISTKLVKSS*RTSFSMVSPFHHHISQRHGIQRQKQNTHAATSSS 180
           N  ++     V SS +T  +  S FHHH SQ  G  R  +N  A T+++
Sbjct: 568 NKKMETDPSTVPSSSQTMATTSSSFHHHSSQA-GPSRDIENGEAPTATA 615


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,880,303
Number of Sequences: 27780
Number of extensions: 233690
Number of successful extensions: 611
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 609
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)