Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P03_F_K04
(624 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 31 0.14
SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 29 0.72
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 27 2.2
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 3.8
SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2... 26 5.1
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe... 25 6.7
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe... 25 6.7
SPCC584.02 |cuf2||Cu metalloregulatory transcription factor Cuf2... 25 6.7
SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyce... 25 6.7
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe... 25 6.7
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 25 6.7
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe... 25 6.7
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S... 25 8.9
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch... 25 8.9
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 31.1 bits (67), Expect = 0.14
Identities = 22/94 (23%), Positives = 29/94 (30%), Gaps = 1/94 (1%)
Frame = +2
Query: 284 PAEAHRDSGEEPASGQRCCRSGES-PPEPLGRS*TLRQDSXEAHDDGRKESTAPDRSYRX 460
P H + GE GE PP P+ H + + P +
Sbjct: 274 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEP 333
Query: 461 GXGKEQIPERHRELRSH*AEAHGNVREEPAPHKG 562
G P +H EL H H E+ HKG
Sbjct: 334 GEHMPPPPFKHHELEEHEGPEHHRGPEDKEHHKG 367
>SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 398
Score = 28.7 bits (61), Expect = 0.72
Identities = 24/80 (30%), Positives = 40/80 (50%)
Frame = +3
Query: 75 QWPAP*VTLPPCKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTXKSL 254
+W T P K L K+ +L+S L+ SCL+D T+ K ++ +E T++ L
Sbjct: 5 EWQRIEETAPGNKCLAKL-NELESILKDAKKSCLKDPTTSMKELVACSE--KTQQVFDDL 61
Query: 255 FDGIEKFDSSQLKHTETQEK 314
+KF +S + +T EK
Sbjct: 62 KRTEKKFHTSLNRFGKTLEK 81
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 27.1 bits (57), Expect = 2.2
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Frame = +2
Query: 443 DRSYRXGXGKEQIPERHRELRSH*AE----AHGNVREEPAPHKG 562
D S R G +IP+RHR+ R + G RE+P H G
Sbjct: 2 DLSSRLSSGSSRIPKRHRDYRDEEPRRERGSGGIGREDPRGHYG 45
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 26.2 bits (55), Expect = 3.8
Identities = 19/53 (35%), Positives = 24/53 (45%)
Frame = -3
Query: 226 TSSADGSTIFSLVSTSRRQLVLKPSS*LFRSVATLGRSLQGGSVTHGAGHCES 68
TS A S I SLVS+S +Q +S S ATL S + + H S
Sbjct: 72 TSPASSSFITSLVSSSSQQSSSSSASLTSSSSATLTSSSSASPTSSSSSHALS 124
>SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 426
Score = 25.8 bits (54), Expect = 5.1
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -2
Query: 242 GLLSGDVFSRRKHNLFIGVDVTETAGVEAFELTLQ 138
G ++G +S +LFIGVD G+ F LQ
Sbjct: 385 GEIAGTAYSSSGDSLFIGVDDPMLGGILEFRRPLQ 419
>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 6.7
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 244 WVFSVATSSADGSTIFSLVSTSRRQL 167
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 6.7
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 244 WVFSVATSSADGSTIFSLVSTSRRQL 167
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPCC584.02 |cuf2||Cu metalloregulatory transcription factor
Cuf2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 177
Score = 25.4 bits (53), Expect = 6.7
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +3
Query: 207 LPSAEDVATEKTXKSLFDGIEKFDSSQLKHTE 302
LP +ED+ + SL D + D+SQL E
Sbjct: 117 LPISEDILGYRKPLSLTDASNRIDASQLNEKE 148
>SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 415
Score = 25.4 bits (53), Expect = 6.7
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = +2
Query: 74 TMACSVSDTPSLQRPPQGRHRPEESARRLQH 166
T + SV T LQRPP RPE +A +QH
Sbjct: 379 TASTSVLPTSILQRPPSIVPRPETAA--IQH 407
>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 6.7
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 244 WVFSVATSSADGSTIFSLVSTSRRQL 167
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 25.4 bits (53), Expect = 6.7
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +3
Query: 12 PTESLSARIFYPLPHQKYIDSQWPAP*VTLP 104
P +SA F P+P+ Y D+ + A V P
Sbjct: 144 PNMYVSANTFIPMPYAHYTDNMYHAKPVNRP 174
>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 6.7
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 244 WVFSVATSSADGSTIFSLVSTSRRQL 167
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 660
Score = 25.0 bits (52), Expect = 8.9
Identities = 10/43 (23%), Positives = 22/43 (51%)
Frame = +3
Query: 201 IVLPSAEDVATEKTXKSLFDGIEKFDSSQLKHTETQEKNPLPD 329
+ L S ED+ + T S+ + + +++HT + K +P+
Sbjct: 134 VALKSEEDIPSSVTRLSVVKLVNRVTYERMRHTMLEFKRSIPE 176
>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1092
Score = 25.0 bits (52), Expect = 8.9
Identities = 18/63 (28%), Positives = 30/63 (47%)
Frame = +3
Query: 111 KDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTXKSLFDGIEKFDSSQL 290
+DL +A S L NT R +D N K L E++ ++ + L EKF + +
Sbjct: 786 RDLVNMAKRFLSSLFSVNT---RKMDVNVKTDLVIGENIELQRYLQQLTQYSEKFLNKES 842
Query: 291 KHT 299
++T
Sbjct: 843 ENT 845
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,324,626
Number of Sequences: 5004
Number of extensions: 44756
Number of successful extensions: 149
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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