Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_K04
         (624 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   5.6  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   5.6  
DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein ...    21   7.4  
DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.              21   7.4  
AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein ...    21   7.4  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   9.8  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   9.8  

>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -1

Query: 318 GSSPESRCASAGSNQTSRYRRIKTXGSSQWRRLQ 217
           GSS +   +   S+ T +    K   SS WR+L+
Sbjct: 190 GSSGDDLSSEWDSDYTDKSNEKKIPKSSGWRKLR 223


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -1

Query: 93  LTEQAIVNQYIFDEEGDRRFVHSATLSDCDS 1
           LTE  IV   + D +GD   +    + DC +
Sbjct: 299 LTEAIIVQAELMDLKGDLEGLVEGVIIDCSN 329


>DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein 2
           protein.
          Length = 117

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +2

Query: 338 CRSGESPPEPLGR 376
           C  GE+P +P+GR
Sbjct: 54  CALGEAPCDPVGR 66


>DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 7/24 (29%), Positives = 16/24 (66%)
 Frame = +3

Query: 135 DLKSQLEGFNTSCLRDVDTNEKIV 206
           +LKS L    + C++++ T ++I+
Sbjct: 21  ELKSGLHTVQSVCMKEIGTAQQII 44


>AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein
           protein.
          Length = 117

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +2

Query: 338 CRSGESPPEPLGR 376
           C  GE+P +P+GR
Sbjct: 54  CALGEAPCDPVGR 66


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -1

Query: 144 SSGLWRPWGGLCREGV 97
           SS +W  WG L   G+
Sbjct: 611 SSAVWFAWGVLLNSGI 626


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = -1

Query: 99  VSLTEQAIVNQYIFDEEGDRRFVHSATLSDCDS 1
           VSL  Q I   Y+ D        HSA  S  +S
Sbjct: 10  VSLQTQRIQGLYLLDNNDSSGIPHSAESSASNS 42


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,725
Number of Sequences: 438
Number of extensions: 3224
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)