Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_K04
         (624 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)...    30   1.1  
At5g60500.1 68418.m07587 undecaprenyl pyrophosphate synthetase f...    28   4.4  
At5g16400.1 68418.m01917 thioredoxin, putative similar to SP|P29...    28   4.4  
At1g49980.1 68414.m05609 UMUC-like DNA repair family protein low...    28   5.8  

>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
           nearly identical to SF2/ASF-like splicing modulator
           Srp30 [Arabidopsis thaliana] GI:4775270
          Length = 268

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
 Frame = +1

Query: 85  LRE*HSLPAKTSPRSPQT*RVSSKASTPAVSVTSTPMKRLCFRLL--KTSPLRRPXSLYS 258
           +RE  S     SP   ++ R  S++  P+ S +S        R +  ++ PL R  SLYS
Sbjct: 182 VREYESRSVSRSPDDSKSYRSRSRSRGPSCSYSSKSRSVSPARSISPRSRPLSRSRSLYS 241

Query: 259 TVSRS 273
           +VSRS
Sbjct: 242 SVSRS 246


>At5g60500.1 68418.m07587 undecaprenyl pyrophosphate synthetase
           family protein / UPP synthetase family protein contains
           putative undecaprenyl diphosphate synthase domain
           [PF01255]; similar to S. cerevisiae dehydrodolichyl
           diphosphate synthetase (DEDOL-PP
           synthase)(Rer2)[SP|P35196], a cis-prenyltransferase
          Length = 271

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -2

Query: 239 LLSGDVFSRRKHNLFIGVDVTETAGVEAFELTLQVCGDLG 120
           ++ G+    +KHNL IG+D    AG  + +  LQ C ++G
Sbjct: 41  IMDGNRRFAKKHNL-IGLDAGHRAGFISVKYILQYCKEIG 79


>At5g16400.1 68418.m01917 thioredoxin, putative similar to SP|P29450
           Thioredoxin F-type, chloroplast precursor (TRX-F) {Pisum
           sativum}; contains Pfam profile: PF00085 Thioredoxin
          Length = 185

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = -1

Query: 405 SXESCRSVQLRPRGSGGLSPLRQHL-CPEAGSSPESRCASAGSNQTSRYRRI 253
           S  S R   +   G+GG SP++QH   P +G + +    S G       RRI
Sbjct: 10  SPTSFRYSPITSTGAGGFSPVKQHCRIPNSGVATKIGFCSGGGGVLDSGRRI 61


>At1g49980.1 68414.m05609 UMUC-like DNA repair family protein low
           similarity to DNA polymerase kappa [Mus musculus]
           GI:14279087; contains Pfam profile PF00817:
           ImpB/MucB/SamB family
          Length = 785

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = -2

Query: 251 RLXGLLSGDVFSRRKHNLFIGVDVTETAGVEAFELTLQVCGDLGE 117
           R  GL  G++    + +++    +T +AGV A  L  +VC D+ +
Sbjct: 211 RERGLSGGEIAEELRSSVYSETGLTCSAGVAANRLLAKVCSDINK 255


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,606,381
Number of Sequences: 28952
Number of extensions: 258736
Number of successful extensions: 877
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 877
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)