Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_K01
         (656 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0629 + 35187318-35187320,35187424-35187534,35188089-351881...    30   1.9  
02_01_0232 + 1543597-1543800,1544189-1544377,1544695-1544859,154...    29   3.3  

>03_06_0629 +
           35187318-35187320,35187424-35187534,35188089-35188191,
           35188357-35188416,35188502-35188661,35188755-35188872
          Length = 184

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = -3

Query: 501 YNYWLLLVSIL*MYEIIDLLGPIXCYFGLFL 409
           Y  W ++ ++L +  ++ L GP+ CY G++L
Sbjct: 66  YLRWHVITALLKLTSVVTLEGPLPCYAGVYL 96


>02_01_0232 +
           1543597-1543800,1544189-1544377,1544695-1544859,
           1545199-1545459,1546059-1546271,1546365-1546587,
           1547974-1548149
          Length = 476

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 10/33 (30%), Positives = 21/33 (63%), Gaps = 4/33 (12%)
 Frame = +3

Query: 57  ILKHIHSFMASSTIGF----RVLKHPTLYWWHR 143
           ++ H+   ++ +T+ F     V+K P++YWW+R
Sbjct: 250 LIDHVDQVLSLATLAFDGVETVVKIPSIYWWYR 282


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,412,865
Number of Sequences: 37544
Number of extensions: 215880
Number of successful extensions: 386
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 386
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)