Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_J24
         (476 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit Vps23|Schizosac...    27   1.9  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    26   2.6  
SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomy...    26   2.6  
SPBC28F2.02 |mep33||mRNA export protein Mep33|Schizosaccharomyce...    26   3.4  
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo...    25   5.9  
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb...    25   7.9  

>SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit
           Vps23|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 487

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +1

Query: 94  VHAFVKRDAPKEDNSLNTLAESAXKTIEELREKVESALXP 213
           V A +K+D  +E  S   L      TIE+L+ K E+   P
Sbjct: 128 VQALIKQDFEREHTSPPELPTKLVNTIEKLKVKEENEAPP 167


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2344

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 15/57 (26%), Positives = 28/57 (49%)
 Frame = -1

Query: 212 GXKADSTFSLNSSIVXFALSASVFRLLSSLGASRLTNACTLARQIANKIISSLFILD 42
           G  A + F ++ SIV  A+ ++V   +  + A           ++ NK+ S L++LD
Sbjct: 410 GYMAITKFEVSQSIVYSAIVSAVAEFIRQILAEDQLLLNNFFEELKNKLESDLYLLD 466


>SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 496

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -1

Query: 182 NSSIVXFALSASVFRLLSSLGASRLTNACTLARQIANKIISSL 54
           N S+  F L A+       +  S  +N C LA+++   ++SSL
Sbjct: 121 NPSLCSFTLPATWSEPPLQISLSTSSNGCRLAQRLLRHVVSSL 163


>SPBC28F2.02 |mep33||mRNA export protein Mep33|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 292

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +1

Query: 229 KLWHDGRQLQRIL*KSEARGSTESL-RSNFLVSKYITPN 342
           K W DGR+  RIL ++E R S  ++ RSN    +Y   N
Sbjct: 216 KKWSDGRR-DRILKQAEERRSNRAVGRSNLSGREYFESN 253


>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
           Swi2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = +1

Query: 304 RSNFLVSKYITPNISNVIMFSTLLNKS 384
           ++  L ++  TPN SNV + ++L+N+S
Sbjct: 505 KNTILSNENNTPNYSNVCLSTSLINRS 531


>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 124 KEDNSLNTLAESAXKTIEELREKVESAL 207
           KE NS++ L+ S  KTIE  R  + S +
Sbjct: 371 KEKNSISELSPSLQKTIEWARVNLASTI 398


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,521,885
Number of Sequences: 5004
Number of extensions: 27244
Number of successful extensions: 89
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)