Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_J24
         (476 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39860| Best HMM Match : DBR1 (HMM E-Value=8.4)                      29   2.0  
SB_31804| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.0  
SB_49607| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.0  
SB_47775| Best HMM Match : Supt5 (HMM E-Value=9.7)                     27   6.0  
SB_16221| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.0  
SB_36932| Best HMM Match : HTH_8 (HMM E-Value=1.4)                     27   7.9  
SB_34920| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  

>SB_39860| Best HMM Match : DBR1 (HMM E-Value=8.4)
          Length = 355

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +1

Query: 109 KRDAPKEDNSLNTLAESAXKTIEELREKVESALXPGD 219
           K+D   + N LN   E   + ++ELR +V+S +  GD
Sbjct: 257 KKDTDDKLNKLNKAQEETGQKLDELRHEVDSKVCMGD 293


>SB_31804| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2047

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +1

Query: 109 KRDAPKEDNSLNTLAESAXKTIEELREKVESALXPGD 219
           K+D   + N LN   E   + ++ELR +V+S +  GD
Sbjct: 291 KKDTDDKLNKLNKAQEETGQKLDELRHEVDSKVCMGD 327


>SB_49607| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4538

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -2

Query: 388  ENFYSIMSRTLLHSIYLGL 332
            E  +SIMS  LLH ++LGL
Sbjct: 3818 EEMFSIMSSVLLHLVFLGL 3836


>SB_47775| Best HMM Match : Supt5 (HMM E-Value=9.7)
          Length = 280

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = +2

Query: 188 KKLNPPXAPETVKKNFGTMVDSFNEFYKNLK 280
           K + PP   E+VKK FG       EFY N K
Sbjct: 183 KGMTPPDLWESVKKRFGREGVKQKEFYANNK 213


>SB_16221| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 834

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +2

Query: 191 KLNPPXAPETVKK--NFGTMVDSFNEFYKNLKPAEAPKA*E 307
           KLN P  P+ VKK  + G++ D  N F  + KPA  P + E
Sbjct: 241 KLNKPSNPDMVKKRRSRGSLPD--NAFLTHRKPASRPSSAE 279


>SB_36932| Best HMM Match : HTH_8 (HMM E-Value=1.4)
          Length = 721

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 109 KRDAPKEDNSLNTLAESAXKTIEELREKVE 198
           KR APK+ N+ + L     K  EELR++ +
Sbjct: 62  KRQAPKDRNTASVLRAKIRKQEEELRKETQ 91


>SB_34920| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 366

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 87 EADSQQDNQQLVHFGYLRTSSRNRLQEST 1
          + D+ Q  +Q +HFG L    +NRL   T
Sbjct: 4  DEDAPQAKRQRIHFGSLEEVEKNRLASQT 32


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,597,109
Number of Sequences: 59808
Number of extensions: 184793
Number of successful extensions: 399
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 399
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 989515521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)