Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_J24
         (476 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81115-3|CAB03293.2|  486|Caenorhabditis elegans Hypothetical pr...    29   1.7  
AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical ...    27   5.3  
AC024793-1|AAF60692.2|  649|Caenorhabditis elegans Atm (ataxia t...    27   7.0  
Z99282-1|CAB16532.1| 1037|Caenorhabditis elegans Hypothetical pr...    27   9.2  
Z19157-1|CAB63418.2|  733|Caenorhabditis elegans Hypothetical pr...    27   9.2  
D86922-1|BAA13180.1|  733|Caenorhabditis elegans cyclic nucleoti...    27   9.2  
AL032646-1|CAA21676.1|  385|Caenorhabditis elegans Hypothetical ...    27   9.2  
AF022985-3|AAB69970.1|  355|Caenorhabditis elegans Hypothetical ...    27   9.2  

>Z81115-3|CAB03293.2|  486|Caenorhabditis elegans Hypothetical
           protein T05D4.3 protein.
          Length = 486

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -3

Query: 252 LSTIVPKFFLTVSGAQGGFNFFPQFL 175
           LSTI+P FF  +S   G +  FP FL
Sbjct: 196 LSTIIPAFFQIISSFFGFWPMFPSFL 221


>AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical
            protein F39C12.1 protein.
          Length = 5105

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 188  KKLNPPXAPETVKKNFGTMVDSFNEFY 268
            + L PP  P T+KK + TM D    FY
Sbjct: 2110 RALRPPTPPPTLKKLYTTMKDVEKAFY 2136


>AC024793-1|AAF60692.2|  649|Caenorhabditis elegans Atm (ataxia
           telangectasia mutated)family protein 1 protein.
          Length = 649

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +1

Query: 97  HAFVKRDAPKEDNSLNTLAESA 162
           H F K D  K DNSLN+ A  A
Sbjct: 78  HQFEKNDLEKVDNSLNSAARKA 99


>Z99282-1|CAB16532.1| 1037|Caenorhabditis elegans Hypothetical
           protein Y70C5A.2 protein.
          Length = 1037

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -1

Query: 359 IITFDIFGVMYLDTKKLLLRLSVLPRASDFYKIR 258
           +ITF IF + YL     +L+LS +  +  F+KI+
Sbjct: 177 LITFLIFSIGYLSGAYHILKLSKMKISKKFWKIQ 210


>Z19157-1|CAB63418.2|  733|Caenorhabditis elegans Hypothetical
           protein ZC84.2 protein.
          Length = 733

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +1

Query: 112 RDAPKEDNSLNTLAESAXKTIEELREKVESAL 207
           R+  K+DN L+  A    KT+EE+ E + +A+
Sbjct: 614 REILKKDNLLDENAPEEQKTVEEIAEHLNNAV 645


>D86922-1|BAA13180.1|  733|Caenorhabditis elegans cyclic
           nucleotide-gated channel protein.
          Length = 733

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +1

Query: 112 RDAPKEDNSLNTLAESAXKTIEELREKVESAL 207
           R+  K+DN L+  A    KT+EE+ E + +A+
Sbjct: 614 REILKKDNLLDENAPEEQKTVEEIAEHLNNAV 645


>AL032646-1|CAA21676.1|  385|Caenorhabditis elegans Hypothetical
           protein Y54E2A.2 protein.
          Length = 385

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 8/81 (9%)
 Frame = +1

Query: 97  HAFVKRDAPKEDNSLNTLAESAXKTIEELREKVES-ALXPGDC*EKLWHD-------GRQ 252
           H F + D P E  SLN   E   +  EEL++  E   +      EK W D        + 
Sbjct: 291 HLFEEGDEPDEAASLNEFDEQIAELREELQKNREDFTVETAAMDEKKWLDMCREVIRDKT 350

Query: 253 LQRIL*KSEARGSTESLRSNF 315
           L + L K   R  T+ +R++F
Sbjct: 351 LHKTL-KEYQRAMTDGVRTHF 370


>AF022985-3|AAB69970.1|  355|Caenorhabditis elegans Hypothetical
           protein T15B7.11 protein.
          Length = 355

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
 Frame = -2

Query: 337 GLCT*ILKNYFSGFRCF--RGLQIFIKFVEAVYHRAKVFLNSLRGXRRIQLFPSIPQLFX 164
           GL    ++NY   +  F    LQ+F+ ++  V+H + +FL +     R+       +L  
Sbjct: 92  GLMQLFIRNYSDQYMLFITAYLQLFVDYLAVVFHASSLFLAAGMALCRVMALNFSNRLKD 151

Query: 163 SHSQPAY 143
               P Y
Sbjct: 152 KWQSPRY 158


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,237,300
Number of Sequences: 27780
Number of extensions: 147661
Number of successful extensions: 408
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 408
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 871571276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)