Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_J24
         (476 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g56400.1 68414.m06486 F-box family protein contains Pfam:PF00...    27   6.6  
At5g41790.1 68418.m05088 COP1-interactive protein 1 / CIP1 almos...    27   8.7  
At4g04885.1 68417.m00711 pre-mRNA cleavage complex-related conta...    27   8.7  
At1g67490.1 68414.m07686 alpha-glucosidase I (GCS1) / KNOPF (KNF...    27   8.7  

>At1g56400.1 68414.m06486 F-box family protein contains Pfam:PF00646
           F-box domain
          Length = 479

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = -2

Query: 229 FLNSLRGXRRIQLFPSIPQLFXSHSQPAYLGYCLL*EHLV*RMHAH 92
           FLN+LRG R + + P + Q       P  L   +  +HLV R   H
Sbjct: 298 FLNNLRGARTLSVCPYLLQTIQECEDPFDLLRPMETQHLVLRTRLH 343


>At5g41790.1 68418.m05088 COP1-interactive protein 1 / CIP1 almost
           identical to CIP1 (GI:836950) [Arabidopsis thaliana]
          Length = 1305

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +1

Query: 94  VHAFVKRDAPKEDNSLNTLAESAXKTIEELREKVESA 204
           VH   KRD+  +   L    ESA + ++EL + + S+
Sbjct: 563 VHEAHKRDSSSQVKELEARVESAEEQVKELNQNLNSS 599


>At4g04885.1 68417.m00711 pre-mRNA cleavage complex-related contains
           weak similarity to Pre-mRNA cleavage complex II protein
           Pcf11 (Fragment) (Swiss-Prot:O94913) [Homo sapiens]
          Length = 808

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +3

Query: 18  DFVKTFSNIQNEQAADYLVGYLPRQC-ACIRQTRC 119
           +F      I+NE A   L G LPRQC  C  + +C
Sbjct: 628 EFDADMLKIRNESAISALYGDLPRQCTTCGLRFKC 662


>At1g67490.1 68414.m07686 alpha-glucosidase I (GCS1) / KNOPF (KNF)
           identical to alpha-glucosidase I (GI:16506680,
           GI:13398928) [Arabidopsis thaliana]
          Length = 852

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 65  LSCWLSASPMCMHSSNEMLLKK 130
           L CW+  +  CMHS  E+L K+
Sbjct: 603 LRCWMYLAADCMHSITELLGKE 624


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,596,606
Number of Sequences: 28952
Number of extensions: 131694
Number of successful extensions: 296
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 294
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 296
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 821630280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)