Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_J22
         (652 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0628 - 25643006-25643123,25643314-25643471,25643559-256436...    90   2e-18
01_05_0142 - 18564697-18564792,18564824-18564928,18565606-185656...    33   0.20 
09_02_0062 - 3742857-3743045,3744641-3744916,3745933-3745992,374...    28   5.6  
06_01_1128 + 9300144-9300273,9300340-9300472,9300585-9300656,930...    27   9.8  
04_01_0011 + 207319-207605,207935-208184,208559-208729                 27   9.8  
01_05_0078 + 17931998-17932062,17933320-17933416,17933506-179336...    27   9.8  

>11_06_0628 -
           25643006-25643123,25643314-25643471,25643559-25643687,
           25644378-25644451,25644771-25644798
          Length = 168

 Score = 89.8 bits (213), Expect = 2e-18
 Identities = 57/140 (40%), Positives = 74/140 (52%), Gaps = 2/140 (1%)
 Frame = +2

Query: 182 W*REHRADIQIEGFNPSAEEA--DEGTDSAVESGVDIVLNHRLXETYAFGDKKSYTLYLK 355
           W  +   D+ I G NPSAE    DEG D      VDIV   RL E   F DKK +  ++K
Sbjct: 35  WVVQGAIDVDI-GANPSAEGGGDDEGVDDQAVKVVDIVDTFRLQEQPPF-DKKQFVTFMK 92

Query: 356 DYMKKLVXKLEXKAPDQXEVFKTNMNKVMKDILGRFKELQFFTGESMDCDGMVAMMEYXX 535
            Y+K L  KL+    ++ E FK N+    K +LG+ K+LQFF GESM  DG +    Y  
Sbjct: 93  RYIKNLSAKLDA---EKQEEFKKNIEGATKYLLGKLKDLQFFVGESMHDDGGLVFAYYK- 148

Query: 536 FDGTQIPIMMFFKHGLQXXK 595
            DG   P  ++F HGL+  K
Sbjct: 149 -DGATDPTFLYFSHGLKEVK 167


>01_05_0142 -
           18564697-18564792,18564824-18564928,18565606-18565678,
           18566262-18567637
          Length = 549

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
 Frame = -1

Query: 526 FHHGNHAITIHRLPSKEL----KFLKPAEDVFHYFVHVCFKYFXLVRRL 392
           FHH  H   ++  PSK+L    ++L+     FH F ++C++Y  + R+L
Sbjct: 245 FHHMLHLFQMYLKPSKKLVEGSQYLERGR-YFHSFANICYRYLKIGRKL 292


>09_02_0062 -
           3742857-3743045,3744641-3744916,3745933-3745992,
           3746554-3748102,3748183-3748418
          Length = 769

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +2

Query: 191 EHRADIQIEGFNPSAEEADEGTDSAVESGVDIVLNHRLXETYAFGDKK 334
           + +  + I   N S EE +E  ++A    VD+ LN    E   +G+KK
Sbjct: 706 QEKFSVSINYENASLEEVEEA-EAAARYAVDVHLNRPTLELKRYGEKK 752


>06_01_1128 +
          9300144-9300273,9300340-9300472,9300585-9300656,
          9300783-9300926,9301453-9301524,9301584-9301677,
          9301782-9301928
          Length = 263

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = +1

Query: 28 EKPFFRFLLFLIASNPS 78
          E PFF FLL L++S+PS
Sbjct: 2  EAPFFFFLLLLVSSSPS 18


>04_01_0011 + 207319-207605,207935-208184,208559-208729
          Length = 235

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = +2

Query: 266 VESGVDIVLNHRLXETYAFGDKKS-YTLYLKDYMKKL 373
           + + +DIV NHRL     F D++  Y+L+L  +++++
Sbjct: 59  INAALDIVDNHRLDGVLYFADEEGVYSLHLFHHLRQI 95


>01_05_0078 +
           17931998-17932062,17933320-17933416,17933506-17933601,
           17933957-17933988,17935143-17935595,17935831-17935975,
           17936058-17936159,17937798-17937890,17939448-17939489,
           17940092-17940202,17940446-17940517,17940596-17940714,
           17940981-17941044,17941133-17942782
          Length = 1046

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -2

Query: 579 PCL-KNIMIGICVPSKXXYSIMATMPSQSIDSPV 481
           PCL K+   GI  P+K    ++ TMPS S  + +
Sbjct: 200 PCLLKDASTGITKPAKEQGKLLVTMPSSSTSTKI 233


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,544,298
Number of Sequences: 37544
Number of extensions: 250003
Number of successful extensions: 550
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 546
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)