Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_J22
         (652 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g16640.1 68416.m02127 translationally controlled tumor family...    82   3e-16
At3g05540.1 68416.m00607 translationally controlled tumor family...    79   2e-15
At2g17050.1 68415.m01968 disease resistance protein (TIR-NBS-LRR...    33   0.12 
At4g29060.1 68417.m04157 elongation factor Ts family protein sim...    28   4.7  
At4g12570.1 68417.m01983 ubiquitin-protein ligase, putative simi...    28   4.7  
At5g49030.1 68418.m06067 tRNA synthetase class I (I, L, M and V)...    27   8.2  

>At3g16640.1 68416.m02127 translationally controlled tumor family
           protein similar to translationally controlled tumor
           protein GB:AAD10032 from [Hevea brasiliensis]
          Length = 168

 Score = 82.2 bits (194), Expect = 3e-16
 Identities = 54/140 (38%), Positives = 71/140 (50%), Gaps = 2/140 (1%)
 Frame = +2

Query: 182 W*REHRADIQIEGFNPSAEEA--DEGTDSAVESGVDIVLNHRLXETYAFGDKKSYTLYLK 355
           W      D+ I G NPSAEE   DEG D + +  VDIV   RL E   + DKK +  Y+K
Sbjct: 35  WVTVGAVDVNI-GANPSAEEGGEDEGVDDSTQKVVDIVDTFRLQEQPTY-DKKGFIAYIK 92

Query: 356 DYMKKLVXKLEXKAPDQXEVFKTNMNKVMKDILGRFKELQFFTGESMDCDGMVAMMEYXX 535
            Y+K L  KL  +  DQ  VFK  +    K +L R  + QFF GE M  D  +    Y  
Sbjct: 93  KYIKLLTPKLSEE--DQA-VFKKGIEGATKFLLPRLSDFQFFVGEGMHDDSTLVFAYYK- 148

Query: 536 FDGTQIPIMMFFKHGLQXXK 595
            +G+  P  ++F HGL+  K
Sbjct: 149 -EGSTNPTFLYFAHGLKEVK 167


>At3g05540.1 68416.m00607 translationally controlled tumor family
           protein similar to translationally controlled tumor
           protein GB:AAD10032 from [Hevea brasiliensis]
          Length = 156

 Score = 79.4 bits (187), Expect = 2e-15
 Identities = 45/131 (34%), Positives = 72/131 (54%), Gaps = 2/131 (1%)
 Frame = +2

Query: 209 QIEGFNPSAEEA--DEGTDSAVESGVDIVLNHRLXETYAFGDKKSYTLYLKDYMKKLVXK 382
           ++EG NPS EE   DEG D      VDI+   RL E  +F DKK + +++K Y+K+L  K
Sbjct: 30  EVEGKNPSGEEGGEDEGVDDQAVKVVDIIDTFRLQEQPSF-DKKQFVMFMKRYIKQLSPK 88

Query: 383 LEXKAPDQXEVFKTNMNKVMKDILGRFKELQFFTGESMDCDGMVAMMEYXXFDGTQIPIM 562
           L+    +  E+FK ++    K ++ + K+ QFF GESM+ +    +  Y   +G   P  
Sbjct: 89  LDS---ENQELFKKHIESATKFLMSKLKDFQFFVGESMEGEEGSLVFAYYR-EGATDPTF 144

Query: 563 MFFKHGLQXXK 595
           ++  +GL+  K
Sbjct: 145 LYLAYGLKEIK 155


>At2g17050.1 68415.m01968 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1355

 Score = 33.5 bits (73), Expect = 0.12
 Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 8/91 (8%)
 Frame = +2

Query: 251 GTDSAVESGVDIVLNHRLXETYAFGDKKSYTLYLK-------DYMKKLVXKLEXKAPDQX 409
           G D   +SG++ +  + +   Y  G+  + +LY +       D M+  + KL    P   
Sbjct: 184 GIDWRKQSGLETLAPYYISVKYFSGNPLALSLYEEMLSHMKSDKMEVKLLKLNHPPPQIM 243

Query: 410 EVFKTNMNKVMKDILGRFKELQ-FFTGESMD 499
           EVFK+N N + ++    F ++  FF GE  D
Sbjct: 244 EVFKSNYNALNENEKSMFLDIACFFRGEKAD 274


>At4g29060.1 68417.m04157 elongation factor Ts family protein
           similar to SP|P35019 Elongation factor Ts (EF-Ts)
           {Galdieria sulphuraria}; contains Pfam profiles PF00627:
           UBA/TS-N domain, PF00889: Elongation factor TS, PF00575:
           S1 RNA binding domain
          Length = 953

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +2

Query: 215 EGFNPSAEEADEGTDSAVESG 277
           EGF P+AEEAD+G  S +  G
Sbjct: 272 EGFLPTAEEADDGIGSMMMGG 292


>At4g12570.1 68417.m01983 ubiquitin-protein ligase, putative similar
           to SP|P39940 Ubiquitin--protein ligase RSP5 (EC 6.3.2.-)
           {Saccharomyces cerevisiae}; contains Pfam profiles
           PF00240: Ubiquitin family, PF00632: HECT-domain
           (ubiquitin-transferase)
          Length = 873

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = -1

Query: 316 VCFX*PVVQDYVNSALDGRVRALVSLFSRRIKTLDLDISPVLSS 185
           V F  P+V    ++AL+  +R L  LF   + T+DL +  V SS
Sbjct: 369 VAFPIPIVLPMQSTALEAEIRHLHRLFGSLLTTMDLCMCRVESS 412


>At5g49030.1 68418.m06067 tRNA synthetase class I (I, L, M and V)
           family protein similar to SP|P41972 Isoleucyl-tRNA
           synthetase (EC 6.1.1.5) (Isoleucine--tRNA ligase)
           (IleRS) {Staphylococcus aureus}; contains Pfam profile
           PF00133: tRNA synthetases class I (I, L, M and V)
          Length = 1093

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +2

Query: 428 MNKVMKDILGRFKELQFFTGE---SMDCDGM 511
           +NK++KDI+ R+K LQ +  +     DC G+
Sbjct: 167 LNKILKDIINRYKLLQNYKVQYVPGWDCHGL 197


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,084,758
Number of Sequences: 28952
Number of extensions: 213149
Number of successful extensions: 498
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 493
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)