Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P03_F_J21
(605 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P62753 Cluster: 40S ribosomal protein S6; n=203; Eukary... 157 3e-37
UniRef50_A7SGC3 Cluster: Predicted protein; n=5; Eumetazoa|Rep: ... 156 3e-37
UniRef50_Q9U762 Cluster: 40S ribosomal protein S6; n=10; Culicim... 155 1e-36
UniRef50_P29327-2 Cluster: Isoform B of P29327 ; n=3; Drosophila... 132 6e-30
UniRef50_A0DEZ7 Cluster: Chromosome undetermined scaffold_48, wh... 121 1e-26
UniRef50_A0CU37 Cluster: Chromosome undetermined scaffold_28, wh... 121 1e-26
UniRef50_A5K858 Cluster: 40S ribosomal protein S6, putative; n=5... 120 4e-26
UniRef50_A4VD76 Cluster: Putative uncharacterized protein; n=1; ... 111 9e-24
UniRef50_UPI00005A146E Cluster: PREDICTED: similar to 40S riboso... 111 2e-23
UniRef50_A2EFM7 Cluster: Ribosomal protein S6e, putative; n=2; T... 103 4e-21
UniRef50_Q7QSH4 Cluster: GLP_64_20707_19961; n=1; Giardia lambli... 97 3e-19
UniRef50_O15598 Cluster: Ribosomal protein S6; n=6; Entamoeba hi... 97 3e-19
UniRef50_Q9NE83 Cluster: 40S ribosomal protein S6; n=9; Trypanos... 90 4e-17
UniRef50_A2A3R7 Cluster: Ribosomal protein S6; n=1; Homo sapiens... 80 3e-14
UniRef50_Q8SRY0 Cluster: 40S ribosomal protein S6; n=1; Encephal... 73 4e-12
UniRef50_Q98SA3 Cluster: 40S ribosomal protein S6; n=1; Guillard... 73 7e-12
UniRef50_Q4V5Z5 Cluster: IP07914p; n=1; Drosophila melanogaster|... 52 8e-06
UniRef50_UPI00015BAF12 Cluster: SSU ribosomal protein S6E; n=1; ... 40 0.035
UniRef50_O29739 Cluster: 30S ribosomal protein S6e; n=7; Euryarc... 40 0.035
UniRef50_Q2NGM7 Cluster: 30S ribosomal protein S6e; n=2; Methano... 39 0.11
UniRef50_UPI0000DC1AEC Cluster: UPI0000DC1AEC related cluster; n... 38 0.24
UniRef50_Q3LVW0 Cluster: Ribosomal protein S6; n=1; Bigelowiella... 37 0.43
UniRef50_Q74MJ5 Cluster: 30S ribosomal protein S6e; n=1; Nanoarc... 36 0.74
UniRef50_Q8U3H8 Cluster: 30S ribosomal protein S6e; n=4; Archaea... 34 3.0
UniRef50_Q9I2G3 Cluster: Putative uncharacterized protein; n=10;... 33 4.0
UniRef50_Q5JDK8 Cluster: 30S ribosomal protein S6e; n=1; Thermoc... 33 5.2
UniRef50_Q7VKW9 Cluster: Possible uroporphyrinogen III synthase;... 33 6.9
UniRef50_A1SN07 Cluster: ATP-dependent helicase HrpA; n=4; Actin... 33 6.9
UniRef50_Q9HMJ5 Cluster: 30S ribosomal protein S6e; n=6; Halobac... 33 6.9
UniRef50_O86476 Cluster: Clumping factor B precursor; n=31; Stap... 33 6.9
UniRef50_A6QZZ0 Cluster: Predicted protein; n=1; Ajellomyces cap... 32 9.2
UniRef50_Q6LXY7 Cluster: 30S ribosomal protein S6e; n=4; Archaea... 32 9.2
>UniRef50_P62753 Cluster: 40S ribosomal protein S6; n=203;
Eukaryota|Rep: 40S ribosomal protein S6 - Homo sapiens
(Human)
Length = 249
Score = 157 bits (380), Expect = 3e-37
Identities = 84/119 (70%), Positives = 90/119 (75%)
Frame = +3
Query: 249 RAVLTNSRVRLLMSKGHSCYRPRRDGXRKRKSVRGCIVDANLSVLALVIVRKGAXEIPGL 428
+ VLT+ RVRLL+SKGHSCYRPRR G RKRKSVRGCIVDANLSVL LVIV+KG +IPGL
Sbjct: 65 QGVLTHGRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDANLSVLNLVIVKKGEKDIPGL 124
Query: 429 TDGNVPRRLGPKRASKIRKLFNLSXXXXXXXXXXXXXLPAKEGKENAKPRHKAPXIQRL 605
TD VPRRLGPKRAS+IRKLFNLS L KEGK KPR KAP IQRL
Sbjct: 125 TDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYVVRKPL-NKEGK---KPRTKAPKIQRL 179
Score = 120 bits (290), Expect = 2e-26
Identities = 52/66 (78%), Positives = 58/66 (87%)
Frame = +2
Query: 56 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVXADQLGDEWKGYVLRVAGGNDKQG 235
MKLN+S+PATGCQKL EV DE KLR FYEKRM EV AD LG+EWKGYV+R++GGNDKQG
Sbjct: 1 MKLNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADALGEEWKGYVVRISGGNDKQG 60
Query: 236 FPMKQG 253
FPMKQG
Sbjct: 61 FPMKQG 66
>UniRef50_A7SGC3 Cluster: Predicted protein; n=5; Eumetazoa|Rep:
Predicted protein - Nematostella vectensis
Length = 245
Score = 156 bits (379), Expect = 3e-37
Identities = 77/119 (64%), Positives = 88/119 (73%)
Frame = +3
Query: 249 RAVLTNSRVRLLMSKGHSCYRPRRDGXRKRKSVRGCIVDANLSVLALVIVRKGAXEIPGL 428
+ ++TN RVRLL+SKGHSCYRPRR G RKRKSVRGCIVD+ LSVL+LVIV+KG +IPGL
Sbjct: 65 QGIMTNGRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSQLSVLSLVIVKKGEQDIPGL 124
Query: 429 TDGNVPRRLGPKRASKIRKLFNLSXXXXXXXXXXXXXLPAKEGKENAKPRHKAPXIQRL 605
TD +PRRLGPKR KIRK+FNLS LP KEGK K + KAP IQRL
Sbjct: 125 TDNTIPRRLGPKRVGKIRKMFNLSKEDDVRQYVIRRPLPEKEGK---KAKSKAPKIQRL 180
Score = 114 bits (274), Expect = 2e-24
Identities = 48/66 (72%), Positives = 54/66 (81%)
Frame = +2
Query: 56 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVXADQLGDEWKGYVLRVAGGNDKQG 235
MKLN+SYP TGCQKL E+ DE K+R FY+KRM EV + LGDEWKGYV R+ GGNDKQG
Sbjct: 1 MKLNISYPVTGCQKLIEIEDERKVRSFYDKRMAMEVSGECLGDEWKGYVFRITGGNDKQG 60
Query: 236 FPMKQG 253
FPMKQG
Sbjct: 61 FPMKQG 66
>UniRef50_Q9U762 Cluster: 40S ribosomal protein S6; n=10;
Culicimorpha|Rep: 40S ribosomal protein S6 - Aedes
albopictus (Forest day mosquito)
Length = 349
Score = 155 bits (375), Expect = 1e-36
Identities = 78/119 (65%), Positives = 88/119 (73%)
Frame = +3
Query: 249 RAVLTNSRVRLLMSKGHSCYRPRRDGXRKRKSVRGCIVDANLSVLALVIVRKGAXEIPGL 428
+ VLTN+RVRLL+ KGHSCYRPRR G RKRKSVRGCIVD NLS LAL++V+KG +IPGL
Sbjct: 65 QGVLTNTRVRLLLKKGHSCYRPRRTGERKRKSVRGCIVDQNLSALALIVVKKGEKDIPGL 124
Query: 429 TDGNVPRRLGPKRASKIRKLFNLSXXXXXXXXXXXXXLPAKEGKENAKPRHKAPXIQRL 605
TD V RRLGPKRAS IRKL+NL+ LP K+GK KPR KAP IQRL
Sbjct: 125 TDTTVLRRLGPKRASNIRKLYNLTKEDDVRQYVVKRPLPEKDGK---KPRTKAPKIQRL 180
Score = 124 bits (300), Expect = 1e-27
Identities = 53/66 (80%), Positives = 60/66 (90%)
Frame = +2
Query: 56 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVXADQLGDEWKGYVLRVAGGNDKQG 235
MKLNVS+PATG QK FEV+D+HKLR FY+KRMGAE+ AD LGDEWKGYV ++AGGNDKQG
Sbjct: 1 MKLNVSFPATGAQKTFEVMDDHKLRHFYDKRMGAEITADHLGDEWKGYVFKIAGGNDKQG 60
Query: 236 FPMKQG 253
FPMKQG
Sbjct: 61 FPMKQG 66
>UniRef50_P29327-2 Cluster: Isoform B of P29327 ; n=3; Drosophila
melanogaster|Rep: Isoform B of P29327 - Drosophila
melanogaster (Fruit fly)
Length = 200
Score = 132 bits (319), Expect = 6e-30
Identities = 59/66 (89%), Positives = 61/66 (92%)
Frame = +2
Query: 56 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVXADQLGDEWKGYVLRVAGGNDKQG 235
MKLNVSYPATGCQKLFEVVDEHKLR+FYEKRMG V AD LGDEWKGY LR+AGGNDKQG
Sbjct: 1 MKLNVSYPATGCQKLFEVVDEHKLRVFYEKRMGQVVEADILGDEWKGYQLRIAGGNDKQG 60
Query: 236 FPMKQG 253
FPMKQG
Sbjct: 61 FPMKQG 66
Score = 58.4 bits (135), Expect = 1e-07
Identities = 36/83 (43%), Positives = 50/83 (60%)
Frame = +3
Query: 249 RAVLTNSRVRLLMSKGHSCYRPRRDGXRKRKSVRGCIVDANLSVLALVIVRKGAXEIPGL 428
+ VLT+ R+RLL K HSC+ PR + RK K+VR V+AN+S L LV+++K
Sbjct: 65 QGVLTHGRLRLL-KKIHSCFHPRCNKVRKCKTVRKYTVEANVSALTLVVLKKNPS----- 118
Query: 429 TDGNVPRRLGPKRASKIRKLFNL 497
P RLGP R+S I K++ L
Sbjct: 119 -----PCRLGPVRSSNISKIYYL 136
>UniRef50_A0DEZ7 Cluster: Chromosome undetermined scaffold_48, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_48,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 304
Score = 121 bits (292), Expect = 1e-26
Identities = 64/119 (53%), Positives = 77/119 (64%)
Frame = +3
Query: 249 RAVLTNSRVRLLMSKGHSCYRPRRDGXRKRKSVRGCIVDANLSVLALVIVRKGAXEIPGL 428
+ VL RVR+LM KGH YRPR+DG KRKS+RGCIV ++ VLAL +V+KGA EI GL
Sbjct: 70 QGVLFKGRVRILMRKGHKGYRPRKDGEMKRKSIRGCIVGQDIRVLALQVVKKGANEIAGL 129
Query: 429 TDGNVPRRLGPKRASKIRKLFNLSXXXXXXXXXXXXXLPAKEGKENAKPRHKAPXIQRL 605
TD NVPRRLGPKR +K+R+LF P + GK+ R KAP IQRL
Sbjct: 130 TDQNVPRRLGPKRLTKLRRLFGFKKADRVISSEEHG--PQRYGKK----RQKAPKIQRL 182
>UniRef50_A0CU37 Cluster: Chromosome undetermined scaffold_28, whole
genome shotgun sequence; n=6; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_28,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 315
Score = 121 bits (292), Expect = 1e-26
Identities = 63/119 (52%), Positives = 75/119 (63%)
Frame = +3
Query: 249 RAVLTNSRVRLLMSKGHSCYRPRRDGXRKRKSVRGCIVDANLSVLALVIVRKGAXEIPGL 428
+ VL RVR+LM KGH YRPR+DG KRKS+RGCIV ++ VLAL +V+KGA EI GL
Sbjct: 65 QGVLFKGRVRILMRKGHKGYRPRKDGEMKRKSIRGCIVGQDIRVLALQVVKKGANEIAGL 124
Query: 429 TDGNVPRRLGPKRASKIRKLFNLSXXXXXXXXXXXXXLPAKEGKENAKPRHKAPXIQRL 605
TD NVPRRLGPKR +K+R+LF K+ K R KAP IQRL
Sbjct: 125 TDQNVPRRLGPKRLTKLRRLFGFKKADGVAIVQKNLIRRTWTTKD-GKKRQKAPKIQRL 182
Score = 99.5 bits (237), Expect = 5e-20
Identities = 42/66 (63%), Positives = 52/66 (78%)
Frame = +2
Query: 56 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVXADQLGDEWKGYVLRVAGGNDKQG 235
MK N+SYP TG QK E+ D+ K IF++KRMG V AD LG+E+KGYVL++ GGNDKQG
Sbjct: 1 MKFNISYPLTGAQKTVEIDDDKKCSIFFDKRMGQVVEADNLGEEYKGYVLKITGGNDKQG 60
Query: 236 FPMKQG 253
FPM+QG
Sbjct: 61 FPMRQG 66
>UniRef50_A5K858 Cluster: 40S ribosomal protein S6, putative; n=5;
Plasmodium|Rep: 40S ribosomal protein S6, putative -
Plasmodium vivax
Length = 391
Score = 120 bits (288), Expect = 4e-26
Identities = 63/119 (52%), Positives = 76/119 (63%)
Frame = +3
Query: 249 RAVLTNSRVRLLMSKGHSCYRPRRDGXRKRKSVRGCIVDANLSVLALVIVRKGAXEIPGL 428
+ VLTN+RVRLL KG CYRPR+ G ++RKSVRGCIV +LS L L +V+KG EIPGL
Sbjct: 106 QGVLTNNRVRLLFKKGMKCYRPRKKGEKRRKSVRGCIVGQDLSALNLTLVKKGTNEIPGL 165
Query: 429 TDGNVPRRLGPKRASKIRKLFNLSXXXXXXXXXXXXXLPAKEGKENAKPRHKAPXIQRL 605
TD V ++LGPKRA+KIRKLFNL + +N K R P IQRL
Sbjct: 166 TDKAVGKKLGPKRATKIRKLFNLDKTDDVRKYVIGRAI-----SKNGKNRFIKPKIQRL 219
Score = 83.8 bits (198), Expect = 3e-15
Identities = 39/68 (57%), Positives = 46/68 (67%)
Frame = +2
Query: 50 QLMKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVXADQLGDEWKGYVLRVAGGNDK 229
Q MKLN+S P QK E+ DE KL F EKR+G V D +G+E+ GYV R+ GGNDK
Sbjct: 40 QKMKLNISNPLNNVQKSIEIDDEKKLLPFMEKRIGNVVPGDSIGEEFLGYVFRITGGNDK 99
Query: 230 QGFPMKQG 253
QGFPM QG
Sbjct: 100 QGFPMMQG 107
>UniRef50_A4VD76 Cluster: Putative uncharacterized protein; n=1;
Tetrahymena thermophila SB210|Rep: Putative
uncharacterized protein - Tetrahymena thermophila SB210
Length = 293
Score = 111 bits (268), Expect = 9e-24
Identities = 63/136 (46%), Positives = 77/136 (56%), Gaps = 1/136 (0%)
Frame = +3
Query: 201 YFVSLAATTSKDS-R*NRAVLTNSRVRLLMSKGHSCYRPRRDGXRKRKSVRGCIVDANLS 377
Y +A KD + V+ RVRLL+S+GHSC+ RR G RKRKSVRGCIV ++
Sbjct: 48 YVFKIAGGNDKDGFPMKQGVMVRGRVRLLLSEGHSCFTSRRSGFRKRKSVRGCIVGPDMR 107
Query: 378 VLALVIVRKGAXEIPGLTDGNVPRRLGPKRASKIRKLFNLSXXXXXXXXXXXXXLPAKEG 557
VLAL IV+KG EI GLT +PR+LGPKRA+ I+KLF L +
Sbjct: 108 VLALQIVKKGVAEIDGLTTVTLPRKLGPKRANNIKKLFGLK-KEDDPILIKKSVIRRTFK 166
Query: 558 KENAKPRHKAPXIQRL 605
K R K P IQRL
Sbjct: 167 TAKGKDRTKCPKIQRL 182
Score = 98.7 bits (235), Expect = 9e-20
Identities = 42/66 (63%), Positives = 50/66 (75%)
Frame = +2
Query: 56 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVXADQLGDEWKGYVLRVAGGNDKQG 235
MK N+SYP TG QK E+ D+ K IF +K+MG EV D LGDE+KGYV ++AGGNDK G
Sbjct: 1 MKFNISYPLTGAQKCIEIDDDKKCNIFMDKKMGQEVEGDTLGDEFKGYVFKIAGGNDKDG 60
Query: 236 FPMKQG 253
FPMKQG
Sbjct: 61 FPMKQG 66
>UniRef50_UPI00005A146E Cluster: PREDICTED: similar to 40S ribosomal
protein S6; n=1; Canis lupus familiaris|Rep: PREDICTED:
similar to 40S ribosomal protein S6 - Canis familiaris
Length = 154
Score = 111 bits (266), Expect = 2e-23
Identities = 47/65 (72%), Positives = 55/65 (84%)
Frame = +2
Query: 56 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVXADQLGDEWKGYVLRVAGGNDKQG 235
MKLN+S+PATGCQKL E DE K R FYEK M +EV AD LG+EWKGY++R++GGNDKQG
Sbjct: 1 MKLNISFPATGCQKLIEADDERKPRTFYEKHMASEVAADALGEEWKGYMVRISGGNDKQG 60
Query: 236 FPMKQ 250
FPMKQ
Sbjct: 61 FPMKQ 65
Score = 50.0 bits (114), Expect = 4e-05
Identities = 22/29 (75%), Positives = 25/29 (86%)
Frame = +3
Query: 414 EIPGLTDGNVPRRLGPKRASKIRKLFNLS 500
+IPGLTD PR +GPKRAS+IRKLFNLS
Sbjct: 81 DIPGLTDTTEPRHVGPKRASRIRKLFNLS 109
>UniRef50_A2EFM7 Cluster: Ribosomal protein S6e, putative; n=2;
Trichomonas vaginalis G3|Rep: Ribosomal protein S6e,
putative - Trichomonas vaginalis G3
Length = 216
Score = 103 bits (246), Expect = 4e-21
Identities = 46/84 (54%), Positives = 61/84 (72%)
Frame = +3
Query: 249 RAVLTNSRVRLLMSKGHSCYRPRRDGXRKRKSVRGCIVDANLSVLALVIVRKGAXEIPGL 428
+ V+T R+RLL+ G SCYRPR+DG RKRK+VRGCI+ +S L V+++KG EI GL
Sbjct: 65 QGVITPRRIRLLLKTGASCYRPRKDGERKRKTVRGCIISDEISALHCVVLQKGEKEIDGL 124
Query: 429 TDGNVPRRLGPKRASKIRKLFNLS 500
T VPRR GPKRAS +R +F ++
Sbjct: 125 TTTAVPRRFGPKRASTLRAMFGIT 148
Score = 75.8 bits (178), Expect = 8e-13
Identities = 30/66 (45%), Positives = 46/66 (69%)
Frame = +2
Query: 56 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVXADQLGDEWKGYVLRVAGGNDKQG 235
M++ ++YP G Q + ++ D L YEKR+G ++ ++LG ++KGY+ R+ GG DKQG
Sbjct: 1 MRITLAYPENGTQVVVDIDDPAALNALYEKRVGQDIEGEKLGGQFKGYLFRIGGGFDKQG 60
Query: 236 FPMKQG 253
FPMKQG
Sbjct: 61 FPMKQG 66
>UniRef50_Q7QSH4 Cluster: GLP_64_20707_19961; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_64_20707_19961 - Giardia lamblia
ATCC 50803
Length = 248
Score = 97.1 bits (231), Expect = 3e-19
Identities = 47/83 (56%), Positives = 60/83 (72%)
Frame = +3
Query: 249 RAVLTNSRVRLLMSKGHSCYRPRRDGXRKRKSVRGCIVDANLSVLALVIVRKGAXEIPGL 428
+ VL + R RLL+ +G CY RR+G RKRKS+RGCIV +L L++V+V G +PGL
Sbjct: 71 QGVLKSQRARLLLRQGAKCYLHRRNGERKRKSIRGCIVGPDLHALSVVLVDAGDKTLPGL 130
Query: 429 TDGNVPRRLGPKRASKIRKLFNL 497
TD VP+RL PKRASKIR+LF L
Sbjct: 131 TDVVVPKRLVPKRASKIRRLFGL 153
Score = 61.7 bits (143), Expect = 1e-08
Identities = 28/65 (43%), Positives = 37/65 (56%)
Frame = +2
Query: 59 KLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVXADQLGDEWKGYVLRVAGGNDKQGF 238
K+N+S P TG K + D K + + RM +E LG+E+ G R+ GGND QGF
Sbjct: 8 KVNISNPVTGANKSLMIEDFRKSQTIHGLRMASEFDGAALGEEYAGCTFRITGGNDAQGF 67
Query: 239 PMKQG 253
PM QG
Sbjct: 68 PMYQG 72
>UniRef50_O15598 Cluster: Ribosomal protein S6; n=6; Entamoeba
histolytica|Rep: Ribosomal protein S6 - Entamoeba
histolytica
Length = 162
Score = 97.1 bits (231), Expect = 3e-19
Identities = 45/82 (54%), Positives = 61/82 (74%)
Frame = +3
Query: 255 VLTNSRVRLLMSKGHSCYRPRRDGXRKRKSVRGCIVDANLSVLALVIVRKGAXEIPGLTD 434
V TN+RVRLL+ + CY+P R+G R+RK+VRG IV ++SVL ++V+KG EI G+T+
Sbjct: 66 VATNNRVRLLLDGRNGCYKPLRNGERRRKTVRGAIVAGDISVLNTIVVKKGEGEIEGVTN 125
Query: 435 GNVPRRLGPKRASKIRKLFNLS 500
+P R GP+RAS RKLFNLS
Sbjct: 126 DALPMRAGPQRASHFRKLFNLS 147
Score = 81.0 bits (191), Expect = 2e-14
Identities = 36/65 (55%), Positives = 46/65 (70%)
Frame = +2
Query: 59 KLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVXADQLGDEWKGYVLRVAGGNDKQGF 238
K+NV+YPATG K F+ +E R F +KR+G EV A LGDE+KGY+L++ GG DK GF
Sbjct: 1 KINVAYPATGRIKKFDFEEEKNYRPFLDKRIGQEVDASSLGDEFKGYILKITGGCDKDGF 60
Query: 239 PMKQG 253
PM G
Sbjct: 61 PMMTG 65
>UniRef50_Q9NE83 Cluster: 40S ribosomal protein S6; n=9;
Trypanosomatidae|Rep: 40S ribosomal protein S6 -
Leishmania major
Length = 249
Score = 89.8 bits (213), Expect = 4e-17
Identities = 54/119 (45%), Positives = 72/119 (60%), Gaps = 2/119 (1%)
Frame = +3
Query: 255 VLTNSRVRLLMSKGHSCYRPRR--DGXRKRKSVRGCIVDANLSVLALVIVRKGAXEIPGL 428
VL +SRV LL+ +G + R G R+RK+VRGC++ ++++++ + I + G I G+
Sbjct: 68 VLASSRVSLLVKRGAIGFNTFRGYQGERRRKNVRGCVLASDIALVNVTISKVGDQPIEGV 127
Query: 429 TDGNVPRRLGPKRASKIRKLFNLSXXXXXXXXXXXXXLPAKEGKENAKPRHKAPXIQRL 605
TD PRRLGPKRASKIRKLFNLS + K GK K R KAP IQRL
Sbjct: 128 TDTTAPRRLGPKRASKIRKLFNLSRTEDVRKYVVRRRV-VKSGK---KDRLKAPKIQRL 182
Score = 67.7 bits (158), Expect = 2e-10
Identities = 32/67 (47%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Frame = +2
Query: 56 MKLNVSYPATGCQKLFEVVDEHKLRI-FYEKRMGAEVXADQLGDEWKGYVLRVAGGNDKQ 232
MKLN++YP G K FE+ DE R+ + R+G EV G E+KGY+ R+ GG+DK
Sbjct: 1 MKLNIAYPRNGTVKQFEISDEVLRRVQLQDYRLGNEVDGAIFGSEFKGYIFRLRGGSDKD 60
Query: 233 GFPMKQG 253
GFPM G
Sbjct: 61 GFPMVPG 67
>UniRef50_A2A3R7 Cluster: Ribosomal protein S6; n=1; Homo
sapiens|Rep: Ribosomal protein S6 - Homo sapiens (Human)
Length = 91
Score = 80.2 bits (189), Expect = 3e-14
Identities = 35/46 (76%), Positives = 38/46 (82%)
Frame = +2
Query: 56 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVXADQLGDEWK 193
MKLN+S+PATGCQKL EV DE KLR FYEKRM EV AD LG+EWK
Sbjct: 1 MKLNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADALGEEWK 46
>UniRef50_Q8SRY0 Cluster: 40S ribosomal protein S6; n=1;
Encephalitozoon cuniculi|Rep: 40S ribosomal protein S6 -
Encephalitozoon cuniculi
Length = 203
Score = 73.3 bits (172), Expect = 4e-12
Identities = 39/80 (48%), Positives = 51/80 (63%)
Frame = +3
Query: 258 LTNSRVRLLMSKGHSCYRPRRDGXRKRKSVRGCIVDANLSVLALVIVRKGAXEIPGLTDG 437
LT RVR L+SKG + YR RR G R+RKSVRG IV + VL L+I+R G EI GLT+
Sbjct: 53 LTKKRVRPLLSKGDAGYRCRRKGVRRRKSVRGSIVSEEICVLNLIILRPGEKEIDGLTNA 112
Query: 438 NVPRRLGPKRASKIRKLFNL 497
P++ K+RK+F +
Sbjct: 113 VNDVSHLPRKEKKLRKMFGV 132
Score = 48.8 bits (111), Expect = 1e-04
Identities = 20/57 (35%), Positives = 38/57 (66%)
Frame = +2
Query: 98 LFEVVDEHKLRIFYEKRMGAEVXADQLGDEWKGYVLRVAGGNDKQGFPMKQGRPDKQ 268
+FE+ +++R+ Y+K++G + LG+E++G ++ + GG+D QGFPM G K+
Sbjct: 1 MFEIERRNEVRL-YDKKIGDQFDGGILGEEFEGTIMEITGGDDYQGFPMVSGHLTKK 56
>UniRef50_Q98SA3 Cluster: 40S ribosomal protein S6; n=1; Guillardia
theta|Rep: 40S ribosomal protein S6 - Guillardia theta
(Cryptomonas phi)
Length = 209
Score = 72.5 bits (170), Expect = 7e-12
Identities = 30/66 (45%), Positives = 43/66 (65%)
Frame = +2
Query: 56 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVXADQLGDEWKGYVLRVAGGNDKQG 235
MK N++ P+TG Q E+ DE KLRI Y K++ +++ +G EW + + GG DKQG
Sbjct: 1 MKFNIANPSTGVQHTIEIDDEDKLRILYGKKLTSKIDGKIIGKEWDKSIFIITGGQDKQG 60
Query: 236 FPMKQG 253
FPMK+G
Sbjct: 61 FPMKEG 66
Score = 51.2 bits (117), Expect = 2e-05
Identities = 31/84 (36%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Frame = +3
Query: 255 VLTNSRVRLLMSKGHSCYR--PRRDGXRKRKSVRGCIVDANLSVLALVIVRKGAXEIPGL 428
+L+ SRV++L+ KG + R + G R RKSVRGCIV +SVL + ++ ++ +
Sbjct: 67 ILSPSRVKILLKKGSTGCRGYKMKKGERCRKSVRGCIVSPEISVLNIKLLTNKNDDLL-I 125
Query: 429 TDGNVPRRLGPKRASKIRKLFNLS 500
T+ N + L KR+S +RK+ L+
Sbjct: 126 TNKNSEKTLTHKRSSNLRKVLCLT 149
>UniRef50_Q4V5Z5 Cluster: IP07914p; n=1; Drosophila
melanogaster|Rep: IP07914p - Drosophila melanogaster
(Fruit fly)
Length = 147
Score = 52.4 bits (120), Expect = 8e-06
Identities = 33/76 (43%), Positives = 45/76 (59%)
Frame = +3
Query: 270 RVRLLMSKGHSCYRPRRDGXRKRKSVRGCIVDANLSVLALVIVRKGAXEIPGLTDGNVPR 449
R+RLL K HSC+ PR + RK K+VR V+AN+S L LV+++K P
Sbjct: 19 RLRLL-KKIHSCFHPRCNKVRKCKTVRKYTVEANVSALTLVVLKKNPS----------PC 67
Query: 450 RLGPKRASKIRKLFNL 497
RLGP R+S I K++ L
Sbjct: 68 RLGPVRSSNISKIYYL 83
>UniRef50_UPI00015BAF12 Cluster: SSU ribosomal protein S6E; n=1;
Ignicoccus hospitalis KIN4/I|Rep: SSU ribosomal protein
S6E - Ignicoccus hospitalis KIN4/I
Length = 236
Score = 40.3 bits (90), Expect = 0.035
Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Frame = +2
Query: 95 KLFEV-VDEHKLRIFYEKRMGAEVXADQLGDEW-KGYVLRVAGGNDKQGFPMKQGRP 259
K F++ ++ R F KR+G V A LG E KG L + GG+D+ GFPM+ P
Sbjct: 133 KAFQITIEGENARKFIGKRIGETVPASILGIETLKGLQLEIRGGSDESGFPMRPDIP 189
>UniRef50_O29739 Cluster: 30S ribosomal protein S6e; n=7;
Euryarchaeota|Rep: 30S ribosomal protein S6e -
Archaeoglobus fulgidus
Length = 129
Score = 40.3 bits (90), Expect = 0.035
Identities = 21/69 (30%), Positives = 35/69 (50%)
Frame = +3
Query: 201 YFVSLAATTSKDSR*NRAVLTNSRVRLLMSKGHSCYRPRRDGXRKRKSVRGCIVDANLSV 380
Y + + T +D R L + R L+ G +RP+ G RKRK VRG ++ ++
Sbjct: 48 YELKITGGTDRDGFPMRPDLPGTARRRLLLSGGVGFRPKEKGLRKRKGVRGRVISKDILQ 107
Query: 381 LALVIVRKG 407
+ V+V+ G
Sbjct: 108 INTVVVKHG 116
Score = 33.1 bits (72), Expect = 5.2
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Frame = +2
Query: 68 VSYPATG--CQKLFEVVDEHKLRIFYEKRMGAEVXADQLGDEWKGYVLRVAGGNDKQGFP 241
+S P TG QK+ E + ++L K++G +V + + D Y L++ GG D+ GFP
Sbjct: 7 ISDPKTGRAYQKVVEGANANRL---IGKQIG-DVISGTIVDLPPDYELKITGGTDRDGFP 62
Query: 242 MKQGRP 259
M+ P
Sbjct: 63 MRPDLP 68
>UniRef50_Q2NGM7 Cluster: 30S ribosomal protein S6e; n=2;
Methanobacteriaceae|Rep: 30S ribosomal protein S6e -
Methanosphaera stadtmanae (strain DSM 3091)
Length = 130
Score = 38.7 bits (86), Expect = 0.11
Identities = 18/35 (51%), Positives = 23/35 (65%)
Frame = +2
Query: 146 RMGAEVXADQLGDEWKGYVLRVAGGNDKQGFPMKQ 250
++G E LG KGY LR+ GG+DK GFPMK+
Sbjct: 30 KIGEEFNGGVLG--LKGYKLRITGGSDKNGFPMKE 62
>UniRef50_UPI0000DC1AEC Cluster: UPI0000DC1AEC related cluster; n=2;
Rattus norvegicus|Rep: UPI0000DC1AEC UniRef100 entry -
Rattus norvegicus
Length = 227
Score = 37.5 bits (83), Expect = 0.24
Identities = 35/116 (30%), Positives = 55/116 (47%), Gaps = 1/116 (0%)
Frame = +3
Query: 255 VLTNSRVRLLMSKGHS-CYRPRRDGXRKRKSVRGCIVDANLSVLALVIVRKGAXEIPGLT 431
VL + RV LL++ HS Y+P R S++ V +S+L +VI+ G +IPG T
Sbjct: 56 VLIHFRVHLLLNNLHSYIYKPLRTREMNYTSLQDA-VKLPISLLNMVIIINGRKDIPGQT 114
Query: 432 DGNVPRRLGPKRASKIRKLFNLSXXXXXXXXXXXXXLPAKEGKENAKPRHKAPXIQ 599
+R PKR +I+ F++S + K++ KPR K +Q
Sbjct: 115 -----KRWAPKRWRRIQS-FSVSLKTVLST-------KKPQNKDSKKPRPKTHKVQ 157
>UniRef50_Q3LVW0 Cluster: Ribosomal protein S6; n=1; Bigelowiella
natans|Rep: Ribosomal protein S6 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 239
Score = 36.7 bits (81), Expect = 0.43
Identities = 21/65 (32%), Positives = 34/65 (52%)
Frame = +2
Query: 56 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVXADQLGDEWKGYVLRVAGGNDKQG 235
MK+N++ P G Q + DE I K +G + LG+++ + GG+DKQG
Sbjct: 1 MKINIADPILGTQYSIKRDDEFIEHIIGRK-IGDTIEGSILGEDFSRNEFLINGGHDKQG 59
Query: 236 FPMKQ 250
F +K+
Sbjct: 60 FLLKK 64
>UniRef50_Q74MJ5 Cluster: 30S ribosomal protein S6e; n=1;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S6e -
Nanoarchaeum equitans
Length = 126
Score = 35.9 bits (79), Expect = 0.74
Identities = 21/66 (31%), Positives = 37/66 (56%)
Frame = +2
Query: 53 LMKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVXADQLGDEWKGYVLRVAGGNDKQ 232
++K+ VS P +G E + L Y K++G + ++G + GY L++ GG+D
Sbjct: 6 VVKIVVSDPKSGKAIQIETKEPQWL---YGKKIGDTIDGSKIGLD--GYELKITGGSDIA 60
Query: 233 GFPMKQ 250
GFPM++
Sbjct: 61 GFPMRK 66
>UniRef50_Q8U3H8 Cluster: 30S ribosomal protein S6e; n=4;
Archaea|Rep: 30S ribosomal protein S6e - Pyrococcus
furiosus
Length = 125
Score = 33.9 bits (74), Expect = 3.0
Identities = 15/28 (53%), Positives = 22/28 (78%)
Frame = +3
Query: 270 RVRLLMSKGHSCYRPRRDGXRKRKSVRG 353
RVR+L+SKG +RP+ G R++K+VRG
Sbjct: 83 RVRVLLSKGPG-FRPKEKGERRKKTVRG 109
Score = 33.1 bits (72), Expect = 5.2
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 9/77 (11%)
Frame = +2
Query: 59 KLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVXADQL--------GDEWKGYV-LRV 211
KL +S P +G K E+ ++ KR+G ++ A +L G E+ V L +
Sbjct: 5 KLVISDPKSGIAKQVEITGAETEKLI-GKRIGDQIPAKELNINLNELFGKEFPEDVKLEI 63
Query: 212 AGGNDKQGFPMKQGRPD 262
GG DK GFPM RPD
Sbjct: 64 RGGTDKDGFPM---RPD 77
>UniRef50_Q9I2G3 Cluster: Putative uncharacterized protein; n=10;
Pseudomonas|Rep: Putative uncharacterized protein -
Pseudomonas aeruginosa
Length = 631
Score = 33.5 bits (73), Expect = 4.0
Identities = 17/59 (28%), Positives = 26/59 (44%)
Frame = +2
Query: 2 WTFWSFSWLTFDGIDPQLMKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVXADQL 178
W W F W+ ++G Q M N+ A G ++ DEH + E+R + V L
Sbjct: 272 WDIWKFDWVQWNGSAMQPMARNIG-EALGVGARLQIFDEHGQPLRGEQRYASSVRLHDL 329
>UniRef50_Q5JDK8 Cluster: 30S ribosomal protein S6e; n=1;
Thermococcus kodakarensis KOD1|Rep: 30S ribosomal
protein S6e - Pyrococcus kodakaraensis (Thermococcus
kodakaraensis)
Length = 125
Score = 33.1 bits (72), Expect = 5.2
Identities = 27/77 (35%), Positives = 37/77 (48%), Gaps = 9/77 (11%)
Frame = +2
Query: 59 KLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVXADQLG---DEWKGYV------LRV 211
KL +S P G K E+ ++ +R+G E+ A +LG E G L++
Sbjct: 5 KLVISNPKNGVAKQVEISGPEADKLI-GRRIGEEIPASELGLNLSEIFGEEIPADAKLKI 63
Query: 212 AGGNDKQGFPMKQGRPD 262
GG DK GFPM RPD
Sbjct: 64 TGGTDKDGFPM---RPD 77
>UniRef50_Q7VKW9 Cluster: Possible uroporphyrinogen III synthase;
n=1; Haemophilus ducreyi|Rep: Possible uroporphyrinogen
III synthase - Haemophilus ducreyi
Length = 251
Score = 32.7 bits (71), Expect = 6.9
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +2
Query: 56 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVXADQL 178
M + ++YPA+ QKL ++ +H++ Y+ E+ AD L
Sbjct: 1 MNVLITYPASRAQKLVDMCQQHRIFAIYQPIFSVELGADLL 41
>UniRef50_A1SN07 Cluster: ATP-dependent helicase HrpA; n=4;
Actinomycetales|Rep: ATP-dependent helicase HrpA -
Nocardioides sp. (strain BAA-499 / JS614)
Length = 1282
Score = 32.7 bits (71), Expect = 6.9
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +2
Query: 107 VVDEHKLRIFYEKRMGAEVXADQLGDEW 190
VVDEH L FY+ R+GA+V + D+W
Sbjct: 774 VVDEHTLFDFYDARVGADVVSGAHFDQW 801
>UniRef50_Q9HMJ5 Cluster: 30S ribosomal protein S6e; n=6;
Halobacteriaceae|Rep: 30S ribosomal protein S6e -
Halobacterium salinarium (Halobacterium halobium)
Length = 131
Score = 32.7 bits (71), Expect = 6.9
Identities = 20/61 (32%), Positives = 31/61 (50%)
Frame = +2
Query: 68 VSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVXADQLGDEWKGYVLRVAGGNDKQGFPMK 247
V+ P +G FEV D F + +GA V +G + GY + + GG+D G PM+
Sbjct: 8 VADPESGRTYQFEV-DGQDANRFIGREIGAAVDGGAVGLD--GYTVEITGGSDDAGRPMR 64
Query: 248 Q 250
+
Sbjct: 65 E 65
>UniRef50_O86476 Cluster: Clumping factor B precursor; n=31;
Staphylococcus aureus|Rep: Clumping factor B precursor -
Staphylococcus aureus
Length = 913
Score = 32.7 bits (71), Expect = 6.9
Identities = 25/64 (39%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +2
Query: 59 KLNVSYPAT-GCQKLFEVVDEHKLRIFYEKRMGAEVXADQLGDEWKGYVLRVAGGNDKQG 235
KL+ SY A L EV D+ K RI+YE V + + GD K YV+ V G D G
Sbjct: 441 KLSDSYYADPNDSNLKEVTDQFKNRIYYEH---PNVASIKFGDITKTYVVLVEGHYDNTG 497
Query: 236 FPMK 247
+K
Sbjct: 498 KNLK 501
>UniRef50_A6QZZ0 Cluster: Predicted protein; n=1; Ajellomyces
capsulatus NAm1|Rep: Predicted protein - Ajellomyces
capsulatus NAm1
Length = 372
Score = 32.3 bits (70), Expect = 9.2
Identities = 29/80 (36%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Frame = -1
Query: 236 ILACRCRQRHEVHSPSIHRLTDQPXLRRPCAFRKRYEACARPPLRTTSGIPLPGTKRLT- 60
I A R + RH++H+P + R P RRP A +E P RT+S P PGT R T
Sbjct: 217 IAATRHQHRHDLHTP-LPRPKFTP--RRPRA--HSFEDNIHPLFRTSSPEPPPGTTRGTV 271
Query: 59 ---S*AAGQSRRTSAMKKTK 9
S AGQ+ + + + K
Sbjct: 272 VTASPVAGQTISKNTLSRIK 291
>UniRef50_Q6LXY7 Cluster: 30S ribosomal protein S6e; n=4;
Archaea|Rep: 30S ribosomal protein S6e - Methanococcus
maripaludis
Length = 124
Score = 32.3 bits (70), Expect = 9.2
Identities = 14/52 (26%), Positives = 31/52 (59%)
Frame = +3
Query: 270 RVRLLMSKGHSCYRPRRDGXRKRKSVRGCIVDANLSVLALVIVRKGAXEIPG 425
++R+L+ +G Y + G R+RKS+RG + +++++ +V G+ + G
Sbjct: 68 KMRVLLKEGPG-YNVKEKGLRRRKSLRGNTISKDITLINTKVVEYGSAPLGG 118
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 612,526,116
Number of Sequences: 1657284
Number of extensions: 12392315
Number of successful extensions: 33571
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33549
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 43147568152
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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