Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_J21
         (605 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY600516-1|AAT11864.1|  143|Tribolium castaneum optomotor-blind-...    27   0.12 
AY600515-1|AAT11863.1|  134|Tribolium castaneum optomotor-blind-...    27   0.12 
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    24   0.86 
AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory recept...    22   4.6  

>AY600516-1|AAT11864.1|  143|Tribolium castaneum
           optomotor-blind-like protein protein.
          Length = 143

 Score = 27.1 bits (57), Expect = 0.12
 Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
 Frame = +2

Query: 2   WTFWSFSWLTFDGIDPQLMK---LNVSYPATGCQKLFEVVDEHKLRI 133
           + F +  W+     DP++ K   ++   P+TG Q + +VV  HKL++
Sbjct: 33  YKFHNSRWMVAGKADPEMPKRMYIHPDSPSTGEQWMQKVVSFHKLKL 79


>AY600515-1|AAT11863.1|  134|Tribolium castaneum
           optomotor-blind-like protein protein.
          Length = 134

 Score = 27.1 bits (57), Expect = 0.12
 Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
 Frame = +2

Query: 2   WTFWSFSWLTFDGIDPQLMK---LNVSYPATGCQKLFEVVDEHKLRI 133
           + F +  W+     DP++ K   ++   P+TG Q + +VV  HKL++
Sbjct: 33  YKFHNSRWMVAGKADPEMPKRMYIHPDSPSTGEQWMQKVVSFHKLKL 79


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 24.2 bits (50), Expect = 0.86
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 108 TSNNFWHPVAGYETFNFMSCGSIPS 34
           TS+N   P+    + N MSC S+PS
Sbjct: 15  TSSNAMSPMTPTYSMNSMSCVSMPS 39


>AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory receptor
           candidate 2 protein.
          Length = 587

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 9/44 (20%), Positives = 22/44 (50%)
 Frame = -1

Query: 590 RCLMSGFSIFFSFLGWEHAFDDITTYIXXFAKVEQLTDFGSTFG 459
           + +  G   ++  + + H F+ +  Y    A + Q+++  +TFG
Sbjct: 491 KTVSDGIRHYYVNVTFPHLFNGLVDYSLWKALIFQISNLQTTFG 534


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,473
Number of Sequences: 336
Number of extensions: 2879
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15352827
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)