Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P03_F_J21
(605 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizo... 136 2e-33
SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosacch... 136 2e-33
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy... 28 0.92
SPAC2F3.13c |||queuine tRNA-ribosyltransferase |Schizosaccharomy... 26 3.7
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces... 25 8.6
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc... 25 8.6
>SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein
S6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 239
Score = 136 bits (330), Expect = 2e-33
Identities = 73/120 (60%), Positives = 83/120 (69%), Gaps = 1/120 (0%)
Frame = +3
Query: 249 RAVLTNSRVRLLMSKGHSCYRPRRDGXRKRKSVRGCIVDANLSVLALVIVRKGAXEIPGL 428
+ VL RVRLL+ GH CYRPRRDG RKRKSVRGCIV +L+VLAL IV++G +IPGL
Sbjct: 65 QGVLLPHRVRLLLRAGHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIVKQGEQDIPGL 124
Query: 429 TDGNVPRRLGPKRASKIRKLFNLS-XXXXXXXXXXXXXLPAKEGKENAKPRHKAPXIQRL 605
TD VP+RLGPKRASKIR+ FNLS +P KEGK KP KAP IQRL
Sbjct: 125 TDVTVPKRLGPKRASKIRRFFNLSKEDDVRQFVIRREVVPKKEGK---KPYTKAPKIQRL 181
Score = 98.3 bits (234), Expect = 8e-22
Identities = 42/66 (63%), Positives = 51/66 (77%)
Frame = +2
Query: 56 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVXADQLGDEWKGYVLRVAGGNDKQG 235
MKLN+SYPA G QKL E+ D+ +LR+F EKRMG EV D +G E+ GYV ++ GGNDKQG
Sbjct: 1 MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQG 60
Query: 236 FPMKQG 253
FPM QG
Sbjct: 61 FPMFQG 66
>SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein
S6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 239
Score = 136 bits (329), Expect = 2e-33
Identities = 72/120 (60%), Positives = 83/120 (69%), Gaps = 1/120 (0%)
Frame = +3
Query: 249 RAVLTNSRVRLLMSKGHSCYRPRRDGXRKRKSVRGCIVDANLSVLALVIVRKGAXEIPGL 428
+ VL RVRLL+ GH CYRPRRDG RKRKSVRGCIV +L+VLAL I+++G +IPGL
Sbjct: 65 QGVLLPHRVRLLLRAGHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIIKQGEQDIPGL 124
Query: 429 TDGNVPRRLGPKRASKIRKLFNLS-XXXXXXXXXXXXXLPAKEGKENAKPRHKAPXIQRL 605
TD VP+RLGPKRASKIR+ FNLS +P KEGK KP KAP IQRL
Sbjct: 125 TDVTVPKRLGPKRASKIRRFFNLSKEDDVRQFVIRREVVPKKEGK---KPYTKAPKIQRL 181
Score = 98.3 bits (234), Expect = 8e-22
Identities = 42/66 (63%), Positives = 51/66 (77%)
Frame = +2
Query: 56 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVXADQLGDEWKGYVLRVAGGNDKQG 235
MKLN+SYPA G QKL E+ D+ +LR+F EKRMG EV D +G E+ GYV ++ GGNDKQG
Sbjct: 1 MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQG 60
Query: 236 FPMKQG 253
FPM QG
Sbjct: 61 FPMFQG 66
>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 28.3 bits (60), Expect = 0.92
Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Frame = -2
Query: 289 DIRRRTRLFVRTALFHRESLLVVAASDTKYIALPFIA*LISLYFGAHALFVKDTKLVL-- 116
+I R RLF+R ALF + V+ S T + ++ + L GA A F+ D L+
Sbjct: 468 NIERHFRLFIRLALFCVLTTYNVSLSQT-ILLTSIMSVVFLLQTGALAPFINDNPLIQSG 526
Query: 115 VHHFEQLLASRCRVRN 68
+ H L R RN
Sbjct: 527 MRHIRNLQDEYRRRRN 542
>SPAC2F3.13c |||queuine tRNA-ribosyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 348
Score = 26.2 bits (55), Expect = 3.7
Identities = 22/88 (25%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Frame = -2
Query: 463 LGPRRRGTFPSVNPGISWAPLRTITRAKTERLASTIHPRTDLRFLXPSRRGL*HEWPFD- 287
L PRR PSV+ G S + +T + ++L + ++ + L+ L P ++ P
Sbjct: 91 LAPRRTSPLPSVSAGQS--HINIVTASGAKKLTNDLYIKAVLK-LCPELVIPLNDTPTSP 147
Query: 286 --IRRRTRLFVRTALFHRESLLVVAASD 209
++R+ ++ R+ + E LL + A+D
Sbjct: 148 PGVKRKPKIVERSVNWTTELLLALKATD 175
>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1441
Score = 25.0 bits (52), Expect = 8.6
Identities = 14/53 (26%), Positives = 23/53 (43%)
Frame = -1
Query: 251 PVSSGILACRCRQRHEVHSPSIHRLTDQPXLRRPCAFRKRYEACARPPLRTTS 93
P+SS I H H+P + D+ R C F++ +E + P + S
Sbjct: 970 PISSNIPILSVAPFHAHHAPQGYIYVDENSFIRICKFQEDFEYDNKWPYKKVS 1022
>SPAC31A2.14 |||WD repeat protein, human WRDR48
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 962
Score = 25.0 bits (52), Expect = 8.6
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +1
Query: 76 PGNGMPEVVRSGGRAQASYLLR 141
PG+G+P +V R AS +LR
Sbjct: 867 PGSGLPLIVNENTRLSASAMLR 888
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,441,819
Number of Sequences: 5004
Number of extensions: 47464
Number of successful extensions: 100
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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