Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_J21
         (605 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1309 + 25669394-25669399,25669520-25669584,25670543-256706...   113   8e-26
03_03_0207 - 15455163-15455389,15455623-15455895,15455991-154560...   113   1e-25
03_06_0662 + 35377974-35378270,35378354-35378623,35378795-353789...    27   8.7  
03_02_0480 + 8785130-8785192,8785472-8785518,8786415-8786508,878...    27   8.7  

>07_03_1309 +
           25669394-25669399,25669520-25669584,25670543-25670600,
           25670683-25670791,25670872-25671144,25671348-25671589
          Length = 250

 Score =  113 bits (273), Expect = 8e-26
 Identities = 65/121 (53%), Positives = 76/121 (62%), Gaps = 2/121 (1%)
 Frame = +3

Query: 249 RAVLTNSRVRLLMSKGHSCYRP--RRDGXRKRKSVRGCIVDANLSVLALVIVRKGAXEIP 422
           + VLT  RVRLL+ +G  C+R   RRDG R+RKSVRGCIV  +LSV+ LVIV+KG  ++P
Sbjct: 65  QGVLTAGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKGENDLP 124

Query: 423 GLTDGNVPRRLGPKRASKIRKLFNLSXXXXXXXXXXXXXLPAKEGKENAKPRHKAPXIQR 602
           GLTD   PR  GPKRASKIRKLFNLS                    +N K   KAP IQR
Sbjct: 125 GLTDTEKPRMRGPKRASKIRKLFNLSKDDDVRKYVNTYRRTFT--TKNGKKVSKAPKIQR 182

Query: 603 L 605
           L
Sbjct: 183 L 183



 Score = 93.5 bits (222), Expect = 1e-19
 Identities = 39/66 (59%), Positives = 50/66 (75%)
 Frame = +2

Query: 56  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVXADQLGDEWKGYVLRVAGGNDKQG 235
           MK N++ P TGCQK  E+ D+ KLR F++KR+  EV  D LG+E+KGYV ++ GG DKQG
Sbjct: 1   MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60

Query: 236 FPMKQG 253
           FPMKQG
Sbjct: 61  FPMKQG 66


>03_03_0207 -
           15455163-15455389,15455623-15455895,15455991-15456099,
           15456186-15456243,15457002-15457066,15457190-15457195
          Length = 245

 Score =  113 bits (272), Expect = 1e-25
 Identities = 64/121 (52%), Positives = 77/121 (63%), Gaps = 2/121 (1%)
 Frame = +3

Query: 249 RAVLTNSRVRLLMSKGHSCYRP--RRDGXRKRKSVRGCIVDANLSVLALVIVRKGAXEIP 422
           + VLT+ RVRLL+ +G  C+R   RRDG R+RKSVRGCIV  +LSV+ LVIV+KG  ++P
Sbjct: 65  QGVLTSGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKGDNDLP 124

Query: 423 GLTDGNVPRRLGPKRASKIRKLFNLSXXXXXXXXXXXXXLPAKEGKENAKPRHKAPXIQR 602
           GLTD   PR  GPKRASKIRKLFNL+                    +N K   KAP IQR
Sbjct: 125 GLTDTEKPRMRGPKRASKIRKLFNLAKDDDVRKYVNTYRRTFT--TKNGKKVSKAPKIQR 182

Query: 603 L 605
           L
Sbjct: 183 L 183



 Score = 95.1 bits (226), Expect = 4e-20
 Identities = 40/66 (60%), Positives = 50/66 (75%)
 Frame = +2

Query: 56  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVXADQLGDEWKGYVLRVAGGNDKQG 235
           MK N++ P TGCQK  E+ D+ KLR FY+KR+  EV  D LG+E+KGYV ++ GG DKQG
Sbjct: 1   MKFNIANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60

Query: 236 FPMKQG 253
           FPMKQG
Sbjct: 61  FPMKQG 66


>03_06_0662 +
           35377974-35378270,35378354-35378623,35378795-35378973,
           35380073-35380116,35380295-35380384,35380472-35380588,
           35380679-35380803,35380883-35381155,35381253-35381386,
           35381518-35381604,35381714-35381831
          Length = 577

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = -3

Query: 111 TTSNNFWHPVAGYETFNFMSC-GSIP 37
           T +N +++ V GY+ FN  SC G+IP
Sbjct: 34  TFTNLYFNSVPGYKWFNLQSCVGNIP 59


>03_02_0480 +
           8785130-8785192,8785472-8785518,8786415-8786508,
           8786598-8786699,8786988-8787259,8787343-8787420,
           8787648-8787894
          Length = 300

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/39 (28%), Positives = 15/39 (38%)
 Frame = -3

Query: 378 PRDWRQQYIHELIYVFSXHRGAVCNMSGPLTSEDEHGCL 262
           PR W+        Y    HRGA       +  E +HG +
Sbjct: 204 PRKWKTNKGQVFFYCLKRHRGASKKQGASMVEEVDHGTM 242


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,113,106
Number of Sequences: 37544
Number of extensions: 364230
Number of successful extensions: 950
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 948
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)