Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_J21
         (605 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0)              156   1e-38
SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30)                   30   1.3  
SB_55954| Best HMM Match : TIL (HMM E-Value=0.74)                      29   2.2  
SB_47367| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_48944| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.9  
SB_31395| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.9  

>SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0)
          Length = 212

 Score =  156 bits (379), Expect = 1e-38
 Identities = 77/119 (64%), Positives = 88/119 (73%)
 Frame = +3

Query: 249 RAVLTNSRVRLLMSKGHSCYRPRRDGXRKRKSVRGCIVDANLSVLALVIVRKGAXEIPGL 428
           + ++TN RVRLL+SKGHSCYRPRR G RKRKSVRGCIVD+ LSVL+LVIV+KG  +IPGL
Sbjct: 32  QGIMTNGRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSQLSVLSLVIVKKGEQDIPGL 91

Query: 429 TDGNVPRRLGPKRASKIRKLFNLSXXXXXXXXXXXXXLPAKEGKENAKPRHKAPXIQRL 605
           TD  +PRRLGPKR  KIRK+FNLS             LP KEGK   K + KAP IQRL
Sbjct: 92  TDNTIPRRLGPKRVGKIRKMFNLSKEDDVRQYVIRRPLPEKEGK---KAKSKAPKIQRL 147



 Score = 62.1 bits (144), Expect = 3e-10
 Identities = 25/32 (78%), Positives = 27/32 (84%)
 Frame = +2

Query: 158 EVXADQLGDEWKGYVLRVAGGNDKQGFPMKQG 253
           EV  + LGDEWKGYV R+ GGNDKQGFPMKQG
Sbjct: 2   EVSGECLGDEWKGYVFRITGGNDKQGFPMKQG 33


>SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30)
          Length = 796

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -2

Query: 250 LFHRESLLVVAASDTKYIALPFIA*LISLYFGAHALFVK 134
           L H +SL V+  SD + ++LP I   +  Y   H L ++
Sbjct: 268 LLHGKSLFVITTSDPEDVSLPLIPQALPRYLHGHTLVIE 306


>SB_55954| Best HMM Match : TIL (HMM E-Value=0.74)
          Length = 172

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = +3

Query: 345 VRGCIVDANLSVLALVIVRKGAXEIPGLTDGNVPRRLGPKRASKIRK 485
           VR C +D   +VLA  +  + A E  GLT+G V    GP R   +++
Sbjct: 86  VRSCPMDKQSTVLA--VETREACESKGLTEGCVSSAFGPGREEPVQE 130


>SB_47367| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 914

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +2

Query: 209 VAGGNDKQGFPMKQGRPDKQPCSSSDVKGPLMLQ 310
           VA G D  G  +  GR  +  CS SDVKG + +Q
Sbjct: 115 VALGQDYVGLLLNDGRVCRFKCSCSDVKGSVRVQ 148


>SB_48944| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 103

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +3

Query: 291 KGHSCYRPRRDGXRKRKSVRGC 356
           KGH CY  +  G  KR+  R C
Sbjct: 18  KGHGCYAKQLSGFDKRQLTRSC 39


>SB_31395| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 106

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +3

Query: 291 KGHSCYRPRRDGXRKRKSVRGC 356
           KGH CY  +  G  KR+  R C
Sbjct: 18  KGHGCYAKQLSGFDKRQLTRSC 39


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,303,629
Number of Sequences: 59808
Number of extensions: 400342
Number of successful extensions: 1182
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1065
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1179
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1475788250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)