Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P03_F_J20
(655 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_29190| Best HMM Match : No HMM Matches (HMM E-Value=.) 231 4e-61
SB_22642| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.47
SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.82
SB_38055| Best HMM Match : zf-CW (HMM E-Value=1.9) 31 1.1
SB_34751| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_44788| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_5574| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_51309| Best HMM Match : LicD (HMM E-Value=0.0069) 29 4.4
SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_912| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_51968| Best HMM Match : PT (HMM E-Value=0.54) 29 4.4
SB_41099| Best HMM Match : VWA (HMM E-Value=0) 28 7.6
SB_22858| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
>SB_29190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 156
Score = 231 bits (565), Expect = 4e-61
Identities = 119/149 (79%), Positives = 130/149 (87%)
Frame = +3
Query: 150 NNPIYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGII 329
+ P Y FFGVMGA +A++FSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGII
Sbjct: 5 DQPSYVAFFGVMGATAAMVFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGII 64
Query: 330 AIYGLVVAVLIAGALQEPANYPLYKGFIHLGAGLAVGFSGLAAGFAIXIVGDAXVRGTAX 509
AIYGLVVAVLI ++ + +Y LYK F+ LGAGL+VG SGLAAGFAI IVGDA VRGTA
Sbjct: 65 AIYGLVVAVLIGSSISK--DYTLYKSFLDLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQ 122
Query: 510 QPXLFVGMILILIFAEVLGLYGLIVAIYL 596
QP LFVGMILILIFAEVLGLYGLIVA+ L
Sbjct: 123 QPRLFVGMILILIFAEVLGLYGLIVALIL 151
>SB_22642| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1574
Score = 31.9 bits (69), Expect = 0.47
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Frame = -2
Query: 633 REWCVF---RAFILCTGRWRR*VRKDPILQRK*E*ESFRRIT*AXEQYHARXHLP 478
R WCV+ R+ I CT RW R V P + + +S RR+ E + + P
Sbjct: 931 RGWCVYHMGRSLIACTRRWMRKVACSPSKETRPHRQSSRRLASQQESQQSLLNAP 985
>SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3261
Score = 31.1 bits (67), Expect = 0.82
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +2
Query: 302 HSCRHGGYYCHLRSGRGCPDCWCPPGASQLPPLQRV 409
+ CR+ G C + R P C CPPG QRV
Sbjct: 2981 YKCRYQGEVC-VTDSRNVPRCVCPPGCPPAEVSQRV 3015
>SB_38055| Best HMM Match : zf-CW (HMM E-Value=1.9)
Length = 439
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 2/59 (3%)
Frame = -2
Query: 501 YHARXHLPRCXWRNRQPDQRILQPNQHPSG*TLCKGGSWLAPGGHQQSGQ--PRPDRRW 331
YHA+ + +C ++P +L Q S C PGGHQ Q R RW
Sbjct: 264 YHAKNQVVKCYQPGKEPGGHLLPTYQAKSQAVKCYYIPGKEPGGHQAKNQAVTRQRTRW 322
>SB_34751| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1143
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -3
Query: 467 GETGSQTRESYSQTSTQVDEPFVKGVVGWLLEGTSNQDSHDQTV 336
G+ +T SYS S+QV +PF V +QD H+QT+
Sbjct: 713 GDVQKETTGSYSCNSSQVFDPFTLQCVNLPQPIKQHQDKHNQTL 756
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -3
Query: 467 GETGSQTRESYSQTSTQVDEPFVKGVVGWLLEGTSNQDSHDQTV 336
G+ +T SYS S+QV +PF V +QD H+QT+
Sbjct: 44 GDVQKETTGSYSCNSSQVFDPFTLQCVNLPQLIKQHQDKHNQTL 87
>SB_44788| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 979
Score = 29.5 bits (63), Expect = 2.5
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2
Query: 302 HSCRHGGYYCHLRSGRGCPDCW 367
+SC G YYC++ RG DCW
Sbjct: 348 YSCNSGHYYCYV---RGSNDCW 366
>SB_5574| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 388
Score = 29.1 bits (62), Expect = 3.3
Identities = 17/65 (26%), Positives = 24/65 (36%), Gaps = 3/65 (4%)
Frame = -3
Query: 350 HDQTVDGNNTRHDDRNDRLHDQLRP---HHRHXXXXXXXXXXXXXXXXGAEDDSRRRPHN 180
HD T T D + +HD R + RH D +R PHN
Sbjct: 304 HDTTRTARYTTRLDTDRTIHDTARHGPLYTRHGSIRTAQYTTRLDTDRSIHDTARYGPHN 363
Query: 179 SKEGS 165
+++GS
Sbjct: 364 TRQGS 368
>SB_51309| Best HMM Match : LicD (HMM E-Value=0.0069)
Length = 466
Score = 28.7 bits (61), Expect = 4.4
Identities = 17/28 (60%), Positives = 18/28 (64%)
Frame = +1
Query: 154 IQSTDPSLELWGRRLLSSSAPWELPMEL 237
I S D LELWG R LS+SA LP EL
Sbjct: 355 ILSGDFYLELWGARELSNSALNFLPAEL 382
>SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3592
Score = 28.7 bits (61), Expect = 4.4
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = -2
Query: 468 WRNRQPDQRILQPNQHPSG*TLCKGGSWLAPG-GHQQSGQ 352
++ Q +Q +L NQ PS T+ GGS G GH GQ
Sbjct: 2353 FKREQDEQLLLWLNQRPSDWTMTWGGSGTIYGWGHNHRGQ 2392
>SB_912| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 116
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 420 GAGLAVGFSGLAAGFAIXIVG 482
GAG+ VGF LA G + +VG
Sbjct: 46 GAGMTVGFCNLACGICVGLVG 66
>SB_51968| Best HMM Match : PT (HMM E-Value=0.54)
Length = 514
Score = 28.7 bits (61), Expect = 4.4
Identities = 17/56 (30%), Positives = 23/56 (41%)
Frame = -1
Query: 568 RPNTSAKIRIRIIPTNNXGX*AVPRTXASPTMXMAKPAARPENPTAKPAPKWMNPL 401
+P T+ K R PT + + +PT AKP PT +P K PL
Sbjct: 135 KPKTTVKRRPTERPTKSLLPEEEEKERQTPTPTKAKPTTIKRRPTERPTKKPTKPL 190
>SB_41099| Best HMM Match : VWA (HMM E-Value=0)
Length = 3373
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = -3
Query: 653 RLGARGDGSGVCSGRLFCVQVDGDDKSVKTQ 561
RLGAR S GR+FCVQ+ DK++K +
Sbjct: 1146 RLGARIGDSRYFRGRIFCVQI--YDKALKAR 1174
>SB_22858| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1404
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/56 (28%), Positives = 33/56 (58%)
Frame = +3
Query: 207 FSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAGAL 374
+S + A G + G+ ++V+ + + +I V+ IIA+ G++VAV++A A+
Sbjct: 786 YSVIVAVVGVIIAVVGVI-IAVVGVIIAVVGVIIAVVGVIIAVVGVIVAVVVATAV 840
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,857,983
Number of Sequences: 59808
Number of extensions: 521948
Number of successful extensions: 1666
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1643
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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