Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P03_F_J20
(655 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z29095-3|CAA82355.1| 161|Caenorhabditis elegans Hypothetical pr... 206 8e-54
AC024762-4|AAF59473.1| 161|Caenorhabditis elegans Vacuolar h at... 206 8e-54
AB009566-1|BAA75066.1| 161|Caenorhabditis elegans Vha3 protein ... 206 8e-54
AB000918-1|BAA22596.1| 161|Caenorhabditis elegans VHA-2 protein. 206 8e-54
Z29095-6|CAA82354.1| 169|Caenorhabditis elegans Hypothetical pr... 191 3e-49
AB000917-1|BAA22595.1| 169|Caenorhabditis elegans VHA-1 protein. 191 3e-49
Z68317-1|CAA92686.1| 214|Caenorhabditis elegans Hypothetical pr... 83 2e-16
AB000919-1|BAA22597.1| 214|Caenorhabditis elegans VHA-4 protein. 83 2e-16
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l... 33 0.13
AC006689-3|AAO21400.1| 310|Caenorhabditis elegans Hypothetical ... 32 0.31
AC006689-2|AAF39970.2| 341|Caenorhabditis elegans Hypothetical ... 32 0.31
AF022973-5|AAC25797.4| 479|Caenorhabditis elegans Acetylcholine... 31 0.54
Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical p... 29 3.8
U46673-4|AAC48152.2| 1535|Caenorhabditis elegans Laminin related... 29 3.8
AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical ... 29 3.8
AF106591-4|AAO61422.1| 1217|Caenorhabditis elegans Hypothetical ... 29 3.8
AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha... 29 3.8
U88308-4|AAB42323.1| 299|Caenorhabditis elegans Hypothetical pr... 28 5.0
AF039050-10|AAC47933.2| 362|Caenorhabditis elegans Seven tm rec... 28 5.0
Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical pr... 28 6.7
Z69792-1|CAB61002.1| 605|Caenorhabditis elegans Hypothetical pr... 28 6.7
U41037-2|AAA82388.3| 651|Caenorhabditis elegans Hypothetical pr... 28 6.7
L80003-1|AAL77521.1| 1276|Caenorhabditis elegans guanylyl cyclas... 28 6.7
D85744-1|BAA12861.1| 605|Caenorhabditis elegans HCH-1 protein. 28 6.7
AF106591-3|AAO61423.1| 1276|Caenorhabditis elegans Hypothetical ... 28 6.7
AF099923-3|AAN63403.1| 784|Caenorhabditis elegans Ferm domain (... 28 6.7
AF099923-2|AAM48544.1| 814|Caenorhabditis elegans Ferm domain (... 28 6.7
AF099923-1|AAM48545.1| 853|Caenorhabditis elegans Ferm domain (... 28 6.7
Z75955-5|CAB00119.2| 285|Caenorhabditis elegans Hypothetical pr... 27 8.8
>Z29095-3|CAA82355.1| 161|Caenorhabditis elegans Hypothetical
protein R10E11.2 protein.
Length = 161
Score = 206 bits (504), Expect = 8e-54
Identities = 104/146 (71%), Positives = 116/146 (79%), Gaps = 1/146 (0%)
Frame = +3
Query: 162 YGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYG 341
Y PFFG MGAASA IF+ LGAAYGTAKS GI +M VMRPELIMKS+IPV+MAGII IYG
Sbjct: 13 YAPFFGYMGAASAQIFTVLGAAYGTAKSAVGICSMGVMRPELIMKSVIPVIMAGIIGIYG 72
Query: 342 LVVAVLIAGAL-QEPANYPLYKGFIHLGAGLAVGFSGLAAGFAIXIVGDAXVRGTAXQPX 518
LVVA+++ G + A Y L KGF HL AGL G GL AG+AI IVGDA VRGTA QP
Sbjct: 73 LVVAMVLKGKVTSASAGYDLNKGFAHLAAGLTCGLCGLGAGYAIGIVGDAGVRGTAQQPR 132
Query: 519 LFVGMILILIFAEVLGLYGLIVAIYL 596
LFVGMILILIF+EVLGLYG+IVA+ L
Sbjct: 133 LFVGMILILIFSEVLGLYGMIVALIL 158
>AC024762-4|AAF59473.1| 161|Caenorhabditis elegans Vacuolar h
atpase protein 3 protein.
Length = 161
Score = 206 bits (504), Expect = 8e-54
Identities = 104/146 (71%), Positives = 116/146 (79%), Gaps = 1/146 (0%)
Frame = +3
Query: 162 YGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYG 341
Y PFFG MGAASA IF+ LGAAYGTAKS GI +M VMRPELIMKS+IPV+MAGII IYG
Sbjct: 13 YAPFFGYMGAASAQIFTVLGAAYGTAKSAVGICSMGVMRPELIMKSVIPVIMAGIIGIYG 72
Query: 342 LVVAVLIAGAL-QEPANYPLYKGFIHLGAGLAVGFSGLAAGFAIXIVGDAXVRGTAXQPX 518
LVVA+++ G + A Y L KGF HL AGL G GL AG+AI IVGDA VRGTA QP
Sbjct: 73 LVVAMVLKGKVTSASAGYDLNKGFAHLAAGLTCGLCGLGAGYAIGIVGDAGVRGTAQQPR 132
Query: 519 LFVGMILILIFAEVLGLYGLIVAIYL 596
LFVGMILILIF+EVLGLYG+IVA+ L
Sbjct: 133 LFVGMILILIFSEVLGLYGMIVALIL 158
>AB009566-1|BAA75066.1| 161|Caenorhabditis elegans Vha3 protein
protein.
Length = 161
Score = 206 bits (504), Expect = 8e-54
Identities = 104/146 (71%), Positives = 116/146 (79%), Gaps = 1/146 (0%)
Frame = +3
Query: 162 YGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYG 341
Y PFFG MGAASA IF+ LGAAYGTAKS GI +M VMRPELIMKS+IPV+MAGII IYG
Sbjct: 13 YAPFFGYMGAASAQIFTVLGAAYGTAKSAVGICSMGVMRPELIMKSVIPVIMAGIIGIYG 72
Query: 342 LVVAVLIAGAL-QEPANYPLYKGFIHLGAGLAVGFSGLAAGFAIXIVGDAXVRGTAXQPX 518
LVVA+++ G + A Y L KGF HL AGL G GL AG+AI IVGDA VRGTA QP
Sbjct: 73 LVVAMVLKGKVTSASAGYDLNKGFAHLAAGLTCGLCGLGAGYAIGIVGDAGVRGTAQQPR 132
Query: 519 LFVGMILILIFAEVLGLYGLIVAIYL 596
LFVGMILILIF+EVLGLYG+IVA+ L
Sbjct: 133 LFVGMILILIFSEVLGLYGMIVALIL 158
>AB000918-1|BAA22596.1| 161|Caenorhabditis elegans VHA-2 protein.
Length = 161
Score = 206 bits (504), Expect = 8e-54
Identities = 104/146 (71%), Positives = 116/146 (79%), Gaps = 1/146 (0%)
Frame = +3
Query: 162 YGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYG 341
Y PFFG MGAASA IF+ LGAAYGTAKS GI +M VMRPELIMKS+IPV+MAGII IYG
Sbjct: 13 YAPFFGYMGAASAQIFTVLGAAYGTAKSAVGICSMGVMRPELIMKSVIPVIMAGIIGIYG 72
Query: 342 LVVAVLIAGAL-QEPANYPLYKGFIHLGAGLAVGFSGLAAGFAIXIVGDAXVRGTAXQPX 518
LVVA+++ G + A Y L KGF HL AGL G GL AG+AI IVGDA VRGTA QP
Sbjct: 73 LVVAMVLKGKVTSASAGYDLNKGFAHLAAGLTCGLCGLGAGYAIGIVGDAGVRGTAQQPR 132
Query: 519 LFVGMILILIFAEVLGLYGLIVAIYL 596
LFVGMILILIF+EVLGLYG+IVA+ L
Sbjct: 133 LFVGMILILIFSEVLGLYGMIVALIL 158
>Z29095-6|CAA82354.1| 169|Caenorhabditis elegans Hypothetical
protein R10E11.8 protein.
Length = 169
Score = 191 bits (466), Expect = 3e-49
Identities = 92/147 (62%), Positives = 115/147 (78%), Gaps = 1/147 (0%)
Frame = +3
Query: 159 IYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIY 338
+YGPFFG +G SA+ F+A G+AYGTAK+GTGIA+M+V RP+L+MK+IIPVVMAGI+AIY
Sbjct: 20 MYGPFFGSLGVTSAMAFAAAGSAYGTAKAGTGIASMAVARPDLVMKAIIPVVMAGIVAIY 79
Query: 339 GLVVAVLIAGALQEP-ANYPLYKGFIHLGAGLAVGFSGLAAGFAIXIVGDAXVRGTAXQP 515
GLVVAV+++G ++ ANY + F GL G GL AG+AI I GDA VR + QP
Sbjct: 80 GLVVAVIVSGKVEPAGANYTINNAFSQFAGGLVCGLCGLGAGYAIGIAGDAGVRALSQQP 139
Query: 516 XLFVGMILILIFAEVLGLYGLIVAIYL 596
+FVGMILILIFAEVLGLYG+IVA+ L
Sbjct: 140 RMFVGMILILIFAEVLGLYGMIVALIL 166
>AB000917-1|BAA22595.1| 169|Caenorhabditis elegans VHA-1 protein.
Length = 169
Score = 191 bits (466), Expect = 3e-49
Identities = 92/147 (62%), Positives = 115/147 (78%), Gaps = 1/147 (0%)
Frame = +3
Query: 159 IYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIY 338
+YGPFFG +G SA+ F+A G+AYGTAK+GTGIA+M+V RP+L+MK+IIPVVMAGI+AIY
Sbjct: 20 MYGPFFGSLGVTSAMAFAAAGSAYGTAKAGTGIASMAVARPDLVMKAIIPVVMAGIVAIY 79
Query: 339 GLVVAVLIAGALQEP-ANYPLYKGFIHLGAGLAVGFSGLAAGFAIXIVGDAXVRGTAXQP 515
GLVVAV+++G ++ ANY + F GL G GL AG+AI I GDA VR + QP
Sbjct: 80 GLVVAVIVSGKVEPAGANYTINNAFSQFAGGLVCGLCGLGAGYAIGIAGDAGVRALSQQP 139
Query: 516 XLFVGMILILIFAEVLGLYGLIVAIYL 596
+FVGMILILIFAEVLGLYG+IVA+ L
Sbjct: 140 RMFVGMILILIFAEVLGLYGMIVALIL 166
>Z68317-1|CAA92686.1| 214|Caenorhabditis elegans Hypothetical
protein T01H3.1 protein.
Length = 214
Score = 83.0 bits (196), Expect = 2e-16
Identities = 47/150 (31%), Positives = 76/150 (50%), Gaps = 14/150 (9%)
Frame = +3
Query: 183 MGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLI 362
+G ++ S LGA +G +G+ I V P + K+++ ++ +AI+G+++A +
Sbjct: 54 LGIGFSLSLSVLGAGWGIFTTGSSILGGGVKAPRIRTKNLVSIIFCEAVAIFGIIMAFVF 113
Query: 363 AGALQE--PANYP------------LYKGFIHLGAGLAVGFSGLAAGFAIXIVGDAXVRG 500
G L E + P L G++ G GL VG S L G A+ IVG
Sbjct: 114 VGKLAEFRREDLPDTEDGMAILARNLASGYMIFGGGLTVGLSNLVCGLAVGIVGSGAAIA 173
Query: 501 TAXQPXLFVGMILILIFAEVLGLYGLIVAI 590
A P LFV +++I IFA +GL+G+I+ I
Sbjct: 174 DAANPALFVKILIIEIFASAIGLFGMIIGI 203
Score = 39.1 bits (87), Expect = 0.003
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Frame = +3
Query: 414 HLGAGLAVGF----SGLAAGFAIXIVGDAXVRGTAXQPXLFVGMILILIFAEVLGLYGLI 581
H+ AGL +GF S L AG+ I G + + G P + ++ +IF E + ++G+I
Sbjct: 49 HMWAGLGIGFSLSLSVLGAGWGIFTTGSSILGGGVKAPRIRTKNLVSIIFCEAVAIFGII 108
Query: 582 VA 587
+A
Sbjct: 109 MA 110
>AB000919-1|BAA22597.1| 214|Caenorhabditis elegans VHA-4 protein.
Length = 214
Score = 83.0 bits (196), Expect = 2e-16
Identities = 47/150 (31%), Positives = 76/150 (50%), Gaps = 14/150 (9%)
Frame = +3
Query: 183 MGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLI 362
+G ++ S LGA +G +G+ I V P + K+++ ++ +AI+G+++A +
Sbjct: 54 LGIGFSLSLSVLGAGWGIFTTGSSILGGGVKAPRIRTKNLVSIIFCEAVAIFGIIMAFVF 113
Query: 363 AGALQE--PANYP------------LYKGFIHLGAGLAVGFSGLAAGFAIXIVGDAXVRG 500
G L E + P L G++ G GL VG S L G A+ IVG
Sbjct: 114 VGKLAEFRREDLPDTEDGMAILARNLASGYMIFGGGLTVGLSNLVCGLAVGIVGSGAAIA 173
Query: 501 TAXQPXLFVGMILILIFAEVLGLYGLIVAI 590
A P LFV +++I IFA +GL+G+I+ I
Sbjct: 174 DAANPALFVKILIIEIFASAIGLFGMIIGI 203
Score = 39.1 bits (87), Expect = 0.003
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Frame = +3
Query: 414 HLGAGLAVGF----SGLAAGFAIXIVGDAXVRGTAXQPXLFVGMILILIFAEVLGLYGLI 581
H+ AGL +GF S L AG+ I G + + G P + ++ +IF E + ++G+I
Sbjct: 49 HMWAGLGIGFSLSLSVLGAGWGIFTTGSSILGGGVKAPRIRTKNLVSIIFCEAVAIFGII 108
Query: 582 VA 587
+A
Sbjct: 109 MA 110
>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
lipoprotein receptorrelated protein 2 protein.
Length = 2192
Score = 33.5 bits (73), Expect = 0.13
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +2
Query: 296 VDHSCRHGGYYCHLRSGRGCPDCWCPPG 379
V H C +GG+ + S R P C CP G
Sbjct: 1800 VGHECLNGGFCSYANSNRSLPHCICPSG 1827
>AC006689-3|AAO21400.1| 310|Caenorhabditis elegans Hypothetical
protein T22E7.1b protein.
Length = 310
Score = 32.3 bits (70), Expect = 0.31
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -3
Query: 395 GVVGWLLEGTSNQDSHDQTVDGNNTRHDDRNDR 297
GVVG +G+ D H+ T G N+ HD + D+
Sbjct: 12 GVVGAYAQGSCRTDQHEMTCRGKNSLHDLKKDQ 44
>AC006689-2|AAF39970.2| 341|Caenorhabditis elegans Hypothetical
protein T22E7.1a protein.
Length = 341
Score = 32.3 bits (70), Expect = 0.31
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -3
Query: 395 GVVGWLLEGTSNQDSHDQTVDGNNTRHDDRNDR 297
GVVG +G+ D H+ T G N+ HD + D+
Sbjct: 12 GVVGAYAQGSCRTDQHEMTCRGKNSLHDLKKDQ 44
>AF022973-5|AAC25797.4| 479|Caenorhabditis elegans Acetylcholine
receptor protein 15 protein.
Length = 479
Score = 31.5 bits (68), Expect = 0.54
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 7/66 (10%)
Frame = +1
Query: 73 SECVQIVITVFGTCKYSHI*QTKWLKIIQS-------TDPSLELWGRRLLSSSAPWELPM 231
SE V ++ F TC + + T + +QS ++ W R +L +PW L M
Sbjct: 283 SEAVPLLGVFFHTCNFISVLATSFTVYVQSFHFRNQHVHERMDFWMRFILLEWSPWLLRM 342
Query: 232 ELPSQE 249
++P +E
Sbjct: 343 KMPDRE 348
>Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical
protein T22A3.8 protein.
Length = 3102
Score = 28.7 bits (61), Expect = 3.8
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 326 YCHLRSGRGCPDCWCPPGASQ 388
Y ++ SG GC DC C P S+
Sbjct: 1074 YFNITSGDGCEDCGCDPTGSE 1094
>U46673-4|AAC48152.2| 1535|Caenorhabditis elegans Laminin related.
see also lmb-protein 2 protein.
Length = 1535
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 308 CRHGGYYCHLRSGRGCPDCWCPPGASQ 388
C HG Y ++ SG GC +C C P S+
Sbjct: 915 CAHGFY--NITSGLGCQECNCDPLGSE 939
>AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical
protein T22A3.8 protein.
Length = 3102
Score = 28.7 bits (61), Expect = 3.8
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 326 YCHLRSGRGCPDCWCPPGASQ 388
Y ++ SG GC DC C P S+
Sbjct: 1074 YFNITSGDGCEDCGCDPTGSE 1094
>AF106591-4|AAO61422.1| 1217|Caenorhabditis elegans Hypothetical
protein T01A4.1a protein.
Length = 1217
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Frame = -3
Query: 596 QVDGDDKSVKTQYFSENKNKNHSD---E*XRLXSSTTHACISHDAYGETGSQTRE 441
++DG++ K + K KNH+D E L ST+ + ++ D + TR+
Sbjct: 511 ELDGEESQKKNEKKKAKKRKNHNDYLPESDPLLRSTSRSSVNSDKRSSSSGTTRK 565
>AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3102
Score = 28.7 bits (61), Expect = 3.8
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 326 YCHLRSGRGCPDCWCPPGASQ 388
Y ++ SG GC DC C P S+
Sbjct: 1074 YFNITSGDGCEDCGCDPTGSE 1094
>U88308-4|AAB42323.1| 299|Caenorhabditis elegans Hypothetical
protein C32E8.5 protein.
Length = 299
Score = 28.3 bits (60), Expect = 5.0
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = -3
Query: 455 SQTRESYSQTSTQVDE-PFVKGVVGWLLEGTSNQDSHDQTVDGNNTRHDDRNDRLHDQLR 279
S++R+ ++ T+ D+ P +K V E S+ DS + D R DDR D D R
Sbjct: 24 SRSRDRQTRRDTRRDDSPKIKREVKE--EQFSDNDSPRRRRDDRGGRRDDRRDNRRDDRR 81
Query: 278 PH 273
H
Sbjct: 82 DH 83
>AF039050-10|AAC47933.2| 362|Caenorhabditis elegans Seven tm
receptor protein 82 protein.
Length = 362
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +3
Query: 276 RPELIMKSIIPVVMAGIIAIYGLVVAVLIAGALQEPANYPLY 401
RPE ++ +VMA + AIY + +++ L NY LY
Sbjct: 35 RPEYGSYKLLMMVMATLYAIYSAIEVIILPSYLVFEYNYLLY 76
>Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical protein
W01F3.3 protein.
Length = 2175
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/24 (50%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Frame = +2
Query: 329 CHLRSGR-GCPDCWCPPGASQLPP 397
C L + R GCP C CPP PP
Sbjct: 933 CQLVNDRSGCPFCSCPPVKQASPP 956
>Z69792-1|CAB61002.1| 605|Caenorhabditis elegans Hypothetical
protein F40E10.1 protein.
Length = 605
Score = 27.9 bits (59), Expect = 6.7
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +2
Query: 308 CRHGGYYCHLRSGRGCPDCWCPPG-ASQLPPLQRVHPLGCWFG 433
C++GGY + C +C CPPG QL + + GC G
Sbjct: 331 CQNGGYI----NPNDCNNCKCPPGFGGQLCDVAGTNSNGCGAG 369
>U41037-2|AAA82388.3| 651|Caenorhabditis elegans Hypothetical
protein T24C12.3 protein.
Length = 651
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -3
Query: 116 LQVPKTVMTICTHSLHETTFAQDKYGPSF 30
L +PKTV + THS++ + Q+ PSF
Sbjct: 173 LDIPKTVEYLETHSVNCIVYGQENVFPSF 201
>L80003-1|AAL77521.1| 1276|Caenorhabditis elegans guanylyl cyclase
protein.
Length = 1276
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Frame = -3
Query: 596 QVDGDDKSVKTQYFSENKNKNHSD---E*XRLXSSTTHACISHDAYGE 462
++DG++ K + K KNH+D E L ST+ + ++ D + E
Sbjct: 557 ELDGEESQKKNEKKKAKKRKNHNDYLPESDPLLRSTSRSSVNSDKFDE 604
>D85744-1|BAA12861.1| 605|Caenorhabditis elegans HCH-1 protein.
Length = 605
Score = 27.9 bits (59), Expect = 6.7
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +2
Query: 308 CRHGGYYCHLRSGRGCPDCWCPPG-ASQLPPLQRVHPLGCWFG 433
C++GGY + C +C CPPG QL + + GC G
Sbjct: 331 CQNGGYI----NPNDCNNCKCPPGFGGQLCDVAGTNSNGCGAG 369
>AF106591-3|AAO61423.1| 1276|Caenorhabditis elegans Hypothetical
protein T01A4.1c protein.
Length = 1276
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Frame = -3
Query: 596 QVDGDDKSVKTQYFSENKNKNHSD---E*XRLXSSTTHACISHDAYGE 462
++DG++ K + K KNH+D E L ST+ + ++ D + E
Sbjct: 557 ELDGEESQKKNEKKKAKKRKNHNDYLPESDPLLRSTSRSSVNSDKFDE 604
>AF099923-3|AAN63403.1| 784|Caenorhabditis elegans Ferm domain
(protein4.1-ezrin-radixin-moesin) family protein 8,
isoform c protein.
Length = 784
Score = 27.9 bits (59), Expect = 6.7
Identities = 16/61 (26%), Positives = 21/61 (34%), Gaps = 1/61 (1%)
Frame = -3
Query: 503 STTHACISHD-AYGETGSQTRESYSQTSTQVDEPFVKGVVGWLLEGTSNQDSHDQTVDGN 327
S H + D Y ET SQT + + T V E N+D D +
Sbjct: 570 SAIHTVVKSDWNYSETSSQTEKPFDPTDGPPSYEIANSFVQIAFENEQNEDHFDTEISRQ 629
Query: 326 N 324
N
Sbjct: 630 N 630
>AF099923-2|AAM48544.1| 814|Caenorhabditis elegans Ferm domain
(protein4.1-ezrin-radixin-moesin) family protein 8,
isoform a protein.
Length = 814
Score = 27.9 bits (59), Expect = 6.7
Identities = 16/61 (26%), Positives = 21/61 (34%), Gaps = 1/61 (1%)
Frame = -3
Query: 503 STTHACISHD-AYGETGSQTRESYSQTSTQVDEPFVKGVVGWLLEGTSNQDSHDQTVDGN 327
S H + D Y ET SQT + + T V E N+D D +
Sbjct: 570 SAIHTVVKSDWNYSETSSQTEKPFDPTDGPPSYEIANSFVQIAFENEQNEDHFDTEISRQ 629
Query: 326 N 324
N
Sbjct: 630 N 630
>AF099923-1|AAM48545.1| 853|Caenorhabditis elegans Ferm domain
(protein4.1-ezrin-radixin-moesin) family protein 8,
isoform b protein.
Length = 853
Score = 27.9 bits (59), Expect = 6.7
Identities = 16/61 (26%), Positives = 21/61 (34%), Gaps = 1/61 (1%)
Frame = -3
Query: 503 STTHACISHD-AYGETGSQTRESYSQTSTQVDEPFVKGVVGWLLEGTSNQDSHDQTVDGN 327
S H + D Y ET SQT + + T V E N+D D +
Sbjct: 609 SAIHTVVKSDWNYSETSSQTEKPFDPTDGPPSYEIANSFVQIAFENEQNEDHFDTEISRQ 668
Query: 326 N 324
N
Sbjct: 669 N 669
>Z75955-5|CAB00119.2| 285|Caenorhabditis elegans Hypothetical
protein R07B7.10 protein.
Length = 285
Score = 27.5 bits (58), Expect = 8.8
Identities = 28/92 (30%), Positives = 39/92 (42%), Gaps = 4/92 (4%)
Frame = +3
Query: 333 IYGLVVAVLIAGALQEPANYPLYKG----FIHLGAGLAVGFSGLAAGFAIXIVGDAXVRG 500
IY +V ++ QE Y LYKG FI GA ++ F+G AG GD+ V
Sbjct: 34 IYKGIVDCMVKTMKQESV-YGLYKGMFVPFISTGALHSLLFAGYGAGLKFLNPGDSNVMA 92
Query: 501 TAXQPXLFVGMILILIFAEVLGLYGLIVAIYL 596
P + ILI L G ++ + L
Sbjct: 93 RKDLP---MSDILIASICGTLVQVGPVIPVEL 121
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,468,027
Number of Sequences: 27780
Number of extensions: 370114
Number of successful extensions: 1214
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 1108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1190
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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