Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_J11
         (424 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q17811 Cluster: Putative uncharacterized protein; n=2; ...    33   2.4  
UniRef50_Q227W0 Cluster: Putative uncharacterized protein; n=4; ...    32   4.2  
UniRef50_Q7RF44 Cluster: Putative uncharacterized protein PY0486...    32   5.6  
UniRef50_UPI000038CEE9 Cluster: COG0507: ATP-dependent exoDNAse ...    31   9.7  

>UniRef50_Q17811 Cluster: Putative uncharacterized protein; n=2;
           Caenorhabditis elegans|Rep: Putative uncharacterized
           protein - Caenorhabditis elegans
          Length = 400

 Score = 33.1 bits (72), Expect = 2.4
 Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
 Frame = +1

Query: 73  NCKRKSIYENKNVKFK*IQLICYKLXYILFSIKLC---FLHSHGFLFSNHQEESL 228
           NCK    Y NK +K K ++L  Y   Y +FS K     FL+ H F F  H+ ESL
Sbjct: 88  NCKHFIQYPNKQIKTKLLKLKSYSNKYKMFSRKKIYRKFLNIHCFKF--HKFESL 140


>UniRef50_Q227W0 Cluster: Putative uncharacterized protein; n=4;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 304

 Score = 32.3 bits (70), Expect = 4.2
 Identities = 20/79 (25%), Positives = 36/79 (45%)
 Frame = +2

Query: 23  HKPHEQDRCNVSNERLSTVKEKAFMKIKMLNLSKYN*FAINXFIFCLV*NCVFYIHMDFC 202
           +KP++QD+ N  +   + +     +    +N ++YN   I  FI  ++ N  F I++   
Sbjct: 21  YKPYQQDQLNKIDNYSTQICAFTILLCVFINNNQYNYLKIGCFIIIVLINSFFIIYIALR 80

Query: 203 FLIIKKNLCFHDCFKFITK 259
            L  K N   +  FK   K
Sbjct: 81  ILKDKYNQVINLLFKVFEK 99


>UniRef50_Q7RF44 Cluster: Putative uncharacterized protein PY04866;
           n=5; Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein PY04866 - Plasmodium yoelii yoelii
          Length = 955

 Score = 31.9 bits (69), Expect = 5.6
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +2

Query: 50  NVSNERLSTVKEKAFMKIKMLNLSKYN*FAINXFIFCLV*N 172
           N  NE      E  + KIK++N++  N   +N  +FC+V N
Sbjct: 755 NAENEANKAESETDYKKIKIININGKNKIVVNKNLFCIVNN 795


>UniRef50_UPI000038CEE9 Cluster: COG0507: ATP-dependent exoDNAse
           (exonuclease V), alpha subunit - helicase superfamily I
           member; n=1; Nostoc punctiforme PCC 73102|Rep: COG0507:
           ATP-dependent exoDNAse (exonuclease V), alpha subunit -
           helicase superfamily I member - Nostoc punctiforme PCC
           73102
          Length = 705

 Score = 31.1 bits (67), Expect = 9.7
 Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 6/44 (13%)
 Frame = +1

Query: 82  RKSIYENKNVK----FK*IQLICYKLXYILFS--IKLCFLHSHG 195
           R+  + N N+K    FK I L  Y+L +ILFS    + FLHSHG
Sbjct: 83  RRRRWHNPNIKSLLQFK-ISLFSYQLIFILFSYIYLMLFLHSHG 125


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 256,986,687
Number of Sequences: 1657284
Number of extensions: 3735730
Number of successful extensions: 7267
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7264
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 19810951153
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)