Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_J11
         (424 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42844-8|AAB53820.1|  400|Caenorhabditis elegans Hypothetical pr...    33   0.084
AF003145-3|AAB57717.1|  751|Caenorhabditis elegans Cpeb polya bi...    29   1.8  
U64853-5|AAB04978.2|  460|Caenorhabditis elegans Hypothetical pr...    27   4.2  
U20861-11|AAA62291.2| 1714|Caenorhabditis elegans Hypothetical p...    27   5.5  
Z84712-2|CAB06546.2|  551|Caenorhabditis elegans Hypothetical pr...    27   7.3  
Z81130-13|CAB03421.2|  551|Caenorhabditis elegans Hypothetical p...    27   7.3  

>U42844-8|AAB53820.1|  400|Caenorhabditis elegans Hypothetical
           protein C08A9.8 protein.
          Length = 400

 Score = 33.1 bits (72), Expect = 0.084
 Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
 Frame = +1

Query: 73  NCKRKSIYENKNVKFK*IQLICYKLXYILFSIKLC---FLHSHGFLFSNHQEESL 228
           NCK    Y NK +K K ++L  Y   Y +FS K     FL+ H F F  H+ ESL
Sbjct: 88  NCKHFIQYPNKQIKTKLLKLKSYSNKYKMFSRKKIYRKFLNIHCFKF--HKFESL 140


>AF003145-3|AAB57717.1|  751|Caenorhabditis elegans Cpeb polya
           binding family protein 3 protein.
          Length = 751

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 13/37 (35%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
 Frame = +2

Query: 11  QTEDHKPHEQDRCNVSNERLSTVKEKAFM-KIKMLNL 118
           +++  KP E+D  NV  ++LST ++  F+ K++ML +
Sbjct: 58  KSDSVKPTEEDNMNVGFDKLSTDEKNGFLRKLQMLTV 94


>U64853-5|AAB04978.2|  460|Caenorhabditis elegans Hypothetical
           protein K11G9.5 protein.
          Length = 460

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 119 SKYN*FAINXFIFCLV*NCVFYIHMDFCFLIIKKNLCF 232
           +KY    +     CLV  C  Y+ M+F F+ +K ++ F
Sbjct: 6   NKYRVLVVFIGFLCLVSVCSNYVVMNFTFICMKNDMSF 43


>U20861-11|AAA62291.2| 1714|Caenorhabditis elegans Hypothetical
            protein C28H8.3 protein.
          Length = 1714

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +2

Query: 32   HEQDRCNVSNERLSTVKEKAFMKIKMLNLS 121
            H+QD  N   +++ST+K++AF    +L  S
Sbjct: 1398 HQQDILNEEGQKVSTMKQRAFAAKSLLEHS 1427


>Z84712-2|CAB06546.2|  551|Caenorhabditis elegans Hypothetical
           protein T24B1.1 protein.
          Length = 551

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 9/41 (21%), Positives = 23/41 (56%)
 Frame = +2

Query: 8   KQTEDHKPHEQDRCNVSNERLSTVKEKAFMKIKMLNLSKYN 130
           ++ +D K    + CN+   ++  ++E+    ++ L L+K+N
Sbjct: 222 QKAQDQKEKAVEECNMHKRKIVGLEEEIRAMVEQLRLAKFN 262


>Z81130-13|CAB03421.2|  551|Caenorhabditis elegans Hypothetical
           protein T24B1.1 protein.
          Length = 551

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 9/41 (21%), Positives = 23/41 (56%)
 Frame = +2

Query: 8   KQTEDHKPHEQDRCNVSNERLSTVKEKAFMKIKMLNLSKYN 130
           ++ +D K    + CN+   ++  ++E+    ++ L L+K+N
Sbjct: 222 QKAQDQKEKAVEECNMHKRKIVGLEEEIRAMVEQLRLAKFN 262


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,355,022
Number of Sequences: 27780
Number of extensions: 100096
Number of successful extensions: 205
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 692685370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)