Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_J10
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c...    26   5.5  
SPAC2F3.01 ||SPAC323.09|mannosyltransferase complex subunit |Sch...    25   9.5  
SPAC806.06c |||nicotinamide mononucleotide |Schizosaccharomyces ...    25   9.5  

>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 649

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 9/27 (33%), Positives = 20/27 (74%)
 Frame = +3

Query: 447 RLYNNLQPNSPLRYHVYYHVIXLAARV 527
           RLY+ ++  + +R++V Y+V+ +A R+
Sbjct: 246 RLYHIIRAQASIRFYVLYNVLEIADRL 272


>SPAC2F3.01 ||SPAC323.09|mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 8/17 (47%), Positives = 15/17 (88%)
 Frame = +3

Query: 603 QMQKLYRLLHQVLKDQN 653
           +M+K+ R++HQ+ KD+N
Sbjct: 60  EMEKIPRVIHQLWKDEN 76


>SPAC806.06c |||nicotinamide mononucleotide |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = +3

Query: 183 ILTSLGAEISEXKSPKGI--EDDLHKIVGVCDACFKEPSESDIEAIL 317
           I+   G ++       G+  + DLH I+G    C  E + SD+ A L
Sbjct: 242 IMLLAGGDLIASMGEPGVWSDKDLHHILGKFGCCIVERTGSDVWAFL 288


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,479,483
Number of Sequences: 5004
Number of extensions: 45603
Number of successful extensions: 127
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)