Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_J10
         (653 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55495| Best HMM Match : No HMM Matches (HMM E-Value=.)              67   1e-11
SB_33129| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_32196| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_55495| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 858

 Score = 66.9 bits (156), Expect = 1e-11
 Identities = 45/158 (28%), Positives = 84/158 (53%), Gaps = 3/158 (1%)
 Frame = +3

Query: 186 LTSLGAEISEXKSPKGIEDDLHKIVGVCDACFKEPSESDIEAILNSIVSIMVSIPLXRGE 365
           L   GA++ E +S   ++D+L +I+  C  CFKE  ++++E+++NSI+S+++ +P  R E
Sbjct: 57  LKEQGADLKE-ESITPLQDELAEILECCQVCFKE--DAELESVMNSILSLVLVVPEKRNE 113

Query: 366 NLILAFSQRLTKAPGPKLGMVA---LQSLWRLYNNLQPNSPLRYHVYYHVIXLAARVGFV 536
            LI     +L           A   L+ L  L++ L    P+R+ VY   + +AA+   V
Sbjct: 114 -LIKKCCDKLKANMSEDENSSAAARLRVLSVLFSGLPEKDPMRHEVYCTQLTIAAKASLV 172

Query: 537 REVFTGVEQLXKEFANCPPSNEQMQKLYRLLHQVLKDQ 650
            ++ T +E +           +Q ++++RLLH  L D+
Sbjct: 173 DDIPTELELVKGWLGLWDVDADQRRQVFRLLHGALHDE 210


>SB_33129| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 130

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -1

Query: 350 WYRNHNRDNTVQNGFDVRFTRLFETSITNPNDLMQII-LNAL 228
           WY    R N V+NGFD+     +  ++T+P     ++ LN++
Sbjct: 72  WY-GRRRQNCVRNGFDITVLTRYSEAVTHPRTYRALLSLNSV 112


>SB_32196| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1333

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -1

Query: 341 NHNR-DNTVQNGFDVRFTRLFETSITNPND 255
           NHNR +N  +   D+R TR  + ++ NP D
Sbjct: 613 NHNRAENNEEKKLDLRSTRELQGAVLNPRD 642


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,285,581
Number of Sequences: 59808
Number of extensions: 330395
Number of successful extensions: 773
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)