Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_J10
         (653 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80028-7|AAG23984.1|  370|Caenorhabditis elegans Serpentine rece...    28   6.7  
AC006804-1|AAF60755.1|  340|Caenorhabditis elegans Hypothetical ...    27   8.8  

>U80028-7|AAG23984.1|  370|Caenorhabditis elegans Serpentine
           receptor, class w protein124 protein.
          Length = 370

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -3

Query: 126 PCILIPFLNCILLFIIYKH*SECK 55
           PCIL+P + C+L+  + K   +C+
Sbjct: 233 PCILLPIVTCLLVMDLLKTRKKCR 256


>AC006804-1|AAF60755.1|  340|Caenorhabditis elegans Hypothetical
           protein Y53G8B.2 protein.
          Length = 340

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = +3

Query: 489 HVYYHVIXLAARVGFVRE-VFTG 554
           H  YH + LA+R GFVRE + TG
Sbjct: 201 HPGYHTLTLASRKGFVREALITG 223


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,586,996
Number of Sequences: 27780
Number of extensions: 251513
Number of successful extensions: 710
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)