Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_J10
         (653 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g59930.1 68418.m07515 DC1 domain-containing protein / UV-B li...    32   0.29 
At4g14103.1 68417.m02177 F-box family protein contains F-box dom...    30   1.5  
At4g14096.1 68417.m02176 F-box family protein contains F-box dom...    29   2.7  
At1g68710.1 68414.m07850 haloacid dehalogenase-like hydrolase fa...    28   6.2  
At4g33070.1 68417.m04711 pyruvate decarboxylase, putative strong...    27   8.2  
At1g29150.1 68414.m03567 26S proteasome regulatory subunit, puta...    27   8.2  

>At5g59930.1 68418.m07515 DC1 domain-containing protein / UV-B
           light-insensitive protein, putative similar to ULI3
           (UV-B light insensitive) [Arabidopsis thaliana]
           GI:17225050; contains Pfam profile PF03107: DC1 domain
          Length = 656

 Score = 32.3 bits (70), Expect = 0.29
 Identities = 18/36 (50%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +3

Query: 120 CKGQLCLW--TYPWKIRHSN*EDILTSLGAEISEXK 221
           C   LCLW  + P KIRHSN E ILT    E +  K
Sbjct: 519 CDFNLCLWCASLPKKIRHSNDEHILTLCCGEEANGK 554


>At4g14103.1 68417.m02177 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 381

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -2

Query: 205 SAPRLVKISSQFECLIFQGYVHKHSW 128
           S P L+K S   E LIFQG +HK ++
Sbjct: 338 SVPGLLKNSPNLETLIFQGLIHKATY 363


>At4g14096.1 68417.m02176 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 468

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = -2

Query: 205 SAPRLVKISSQFECLIFQGYVHK 137
           S P L+K S   E LIFQG +HK
Sbjct: 331 SLPGLLKNSPNLETLIFQGLIHK 353


>At1g68710.1 68414.m07850 haloacid dehalogenase-like hydrolase family
            protein similar to Potential phospholipid-transporting
            ATPase (EC 3.6.3.1)  from {Mus musculus} SP|P98200, {Bos
            taurus} SP|Q29449, {Homo sapiens} SP|O43520; contains
            InterPro accession IPR005834: Haloacid dehalogenase-like
            hydrolase
          Length = 1200

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +1

Query: 136  VYGHIPGRSGTRTEKIF*RALAP 204
            VYG +P R  T   K+F  ALAP
Sbjct: 1093 VYGELPSRISTGAYKVFVEALAP 1115


>At4g33070.1 68417.m04711 pyruvate decarboxylase, putative strong
           similarity to SP|P51846 Pyruvate decarboxylase isozyme 2
           (EC 4.1.1.1) (PDC) {Nicotiana tabacum}; contains
           InterPro entry IPR000399: Pyruvate decarboxylase
          Length = 607

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 16/65 (24%), Positives = 28/65 (43%)
 Frame = +3

Query: 312 ILNSIVSIMVSIPLXRGENLILAFSQRLTKAPGPKLGMVALQSLWRLYNNLQPNSPLRYH 491
           I N   S+  S+ L + E  I+    R+T A GP  G + +   +R  +     +   Y 
Sbjct: 330 IFNDYSSVGYSL-LLKKEKAIVVQPDRITVANGPTFGCILMSDFFRELSKRVKRNETAYE 388

Query: 492 VYYHV 506
            Y+ +
Sbjct: 389 NYHRI 393


>At1g29150.1 68414.m03567 26S proteasome regulatory subunit,
           putative (RPN6) similar to 19S proteosome subunit 9
           GB:AAC34120 GI:3450889 from [Arabidopsis thaliana]
          Length = 419

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/63 (22%), Positives = 24/63 (38%)
 Frame = +3

Query: 222 SPKGIEDDLHKIVGVCDACFKEPSESDIEAILNSIVSIMVSIPLXRGENLILAFSQRLTK 401
           SP+ I      I  +CD   +E    D+  +L  +      IP  +   ++      + K
Sbjct: 36  SPEAIRIKEQAITNLCDRLTEEKRGEDLRKLLTKLRPFFSLIPKAKTAKIVRGIIDAVAK 95

Query: 402 APG 410
            PG
Sbjct: 96  IPG 98


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,788,212
Number of Sequences: 28952
Number of extensions: 234834
Number of successful extensions: 600
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 600
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)