Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_J09
         (589 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7038| Best HMM Match : No HMM Matches (HMM E-Value=.)              225   2e-59
SB_48688| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-26)          31   0.92 
SB_30577| Best HMM Match : Ldl_recept_a (HMM E-Value=2.8e-25)          31   0.92 
SB_58212| Best HMM Match : 7tm_1 (HMM E-Value=1.7e-38)                 29   2.1  
SB_26423| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_35269| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  
SB_37049| Best HMM Match : Acylphosphatase (HMM E-Value=0.82)          27   8.6  

>SB_7038| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 224

 Score =  225 bits (550), Expect = 2e-59
 Identities = 104/161 (64%), Positives = 123/161 (76%)
 Frame = +3

Query: 24  RVRMSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAV 203
           +V + +L+LQKRLAAS+++CGKKK+WLDPNE NEIAN NSRQN+RK+IKDGL+IKKP  V
Sbjct: 26  KVHVGTLRLQKRLAASLLKCGKKKIWLDPNECNEIANANSRQNVRKLIKDGLIIKKPEIV 85

Query: 204 HSRARVRKNTEARRKGRHCGFGKRRGTANARMPXKELWXXXXXXXXXXXXXXXTAXXIDR 383
           HSRARVRK  EAR KGRH G GKR+GTANARMP K +W                A  ID 
Sbjct: 86  HSRARVRKADEARSKGRHSGHGKRKGTANARMPQKTIWIRRMRVLRRLLRKYREAKKIDN 145

Query: 384 HLYHSLYMXAKGNVFXNKRVLMEYIHRXKADXAXTXMLSDQ 506
           H+YHSLYM +KGNVF NKRVLMEYIH+ KA+ A + +LSDQ
Sbjct: 146 HMYHSLYMKSKGNVFKNKRVLMEYIHKKKAEKARSKLLSDQ 186


>SB_48688| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-26)
          Length = 351

 Score = 30.7 bits (66), Expect = 0.92
 Identities = 18/60 (30%), Positives = 22/60 (36%)
 Frame = -2

Query: 555 PRGACVPPLLYCGGPQPGR*AXSXWXCQPXSCGCTP*AHACX*THYPSXSCRVSGIDACQ 376
           P G CV P  +C G          W C   SC      HAC      + S   +G+  CQ
Sbjct: 82  PDGKCVHPSKFCNGESDCTDGSDEWSCD-NSCSS---RHACADGTCVTWSLTCNGVSDCQ 137


>SB_30577| Best HMM Match : Ldl_recept_a (HMM E-Value=2.8e-25)
          Length = 147

 Score = 30.7 bits (66), Expect = 0.92
 Identities = 18/60 (30%), Positives = 22/60 (36%)
 Frame = -2

Query: 555 PRGACVPPLLYCGGPQPGR*AXSXWXCQPXSCGCTP*AHACX*THYPSXSCRVSGIDACQ 376
           P G CV P  +C G          W C   SC      HAC      + S   +G+  CQ
Sbjct: 82  PDGKCVHPSKFCNGESDCTDGSDEWSCD-NSCSS---RHACADGTCVTWSLTCNGVSDCQ 137


>SB_58212| Best HMM Match : 7tm_1 (HMM E-Value=1.7e-38)
          Length = 352

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
 Frame = -3

Query: 299 HTRIGSTSSLTKATVTTLST----CLCVFADTGAGVDCYRFLDDETILDHLTD-VLSGVG 135
           +T +G  S+    T+T LS     CL +    G        +  +  L   T+ +L+ + 
Sbjct: 5   NTSVGYNSTSAGFTITDLSLLPAYCLAISVGLGGNGLVIGVVRKKRSLHTTTNYLLANLA 64

Query: 134 VCDLIDFIWIQPHLLFT-TSHNRG 66
           + DL++ IW  P L+ T   H RG
Sbjct: 65  LADLLNLIWCIPGLVLTFVEHPRG 88


>SB_26423| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 175

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +3

Query: 210 RARVRKNTEARRKGRHCGFGKRRGTANAR 296
           +A  RK    RR+ R  G  K+R TANAR
Sbjct: 17  KANSRKKRRRRRRPRLTGLSKQRQTANAR 45


>SB_35269| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 172

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -2

Query: 288 WQYLFSYQSHSDDPFYVPLCFCGH 217
           W++  ++  H+DDPF V    C H
Sbjct: 91  WRWAHNHSIHADDPFEVACPHCRH 114


>SB_37049| Best HMM Match : Acylphosphatase (HMM E-Value=0.82)
          Length = 646

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -2

Query: 288 WQYLFSYQSHSDDPFYVPLCFCGH 217
           W++  ++  H+DDPF V    C H
Sbjct: 91  WRWAHNHSIHADDPFEVACPHCRH 114


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,127,816
Number of Sequences: 59808
Number of extensions: 375480
Number of successful extensions: 879
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 878
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1422302661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)