Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_J09
         (589 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g16780.1 68416.m02142 60S ribosomal protein L19 (RPL19B) simi...   197   4e-51
At4g02230.1 68417.m00302 60S ribosomal protein L19 (RPL19C) simi...   196   1e-50
At1g02780.1 68414.m00233 60S ribosomal protein L19 (RPL19A) simi...   195   2e-50
At4g16030.1 68417.m02432 60S ribosomal protein L19, putative sim...    35   0.046
At1g59910.1 68414.m06749 formin homology 2 domain-containing pro...    28   4.0  
At5g43060.1 68418.m05256 cysteine proteinase, putative / thiol p...    28   5.3  
At5g04710.1 68418.m00480 aspartyl aminopeptidase, putative simil...    28   5.3  
At2g32000.1 68415.m03910 DNA topoisomerase family protein simila...    27   7.0  

>At3g16780.1 68416.m02142 60S ribosomal protein L19 (RPL19B) similar
           to ribosomal protein L19 GB:CAA45090 from [Homo sapiens]
          Length = 209

 Score =  197 bits (481), Expect = 4e-51
 Identities = 91/158 (57%), Positives = 111/158 (70%)
 Frame = +3

Query: 33  MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 212
           M SLK+QKRLAASVM+CGK KVWLDPNE  +I+  NSRQNIRK++KDG +I+KP  +HSR
Sbjct: 1   MVSLKIQKRLAASVMKCGKGKVWLDPNESGDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 213 ARVRKNTEARRKGRHCGFGKRRGTANARMPXKELWXXXXXXXXXXXXXXXTAXXIDRHLY 392
           +R R   EA+RKGRH G+GKR+GT  AR+P K LW                +  IDRH+Y
Sbjct: 61  SRARALNEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRFLSKYRESKKIDRHMY 120

Query: 393 HSLYMXAKGNVFXNKRVLMEYIHRXKADXAXTXMLSDQ 506
           H +YM  KGNVF NKRVLME IH+ KA+ A    L+DQ
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKMKAEKAREKTLADQ 158


>At4g02230.1 68417.m00302 60S ribosomal protein L19 (RPL19C) similar
           to L19 from several species
          Length = 208

 Score =  196 bits (477), Expect = 1e-50
 Identities = 90/158 (56%), Positives = 112/158 (70%)
 Frame = +3

Query: 33  MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 212
           M SLKLQKRLA+SV++CGK+KVWLDPNE ++I+  NSRQNIRK++KDG +I+KP  +HSR
Sbjct: 1   MVSLKLQKRLASSVLKCGKRKVWLDPNEGSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 213 ARVRKNTEARRKGRHCGFGKRRGTANARMPXKELWXXXXXXXXXXXXXXXTAXXIDRHLY 392
           +R R+   A+RKGRH G+GKR+GT  AR+P K LW                   IDRH+Y
Sbjct: 61  SRARQLNIAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDRHMY 120

Query: 393 HSLYMXAKGNVFXNKRVLMEYIHRXKADXAXTXMLSDQ 506
           H +YM  KGNVF NKRVLME IH+ KA+ A    LSDQ
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQ 158


>At1g02780.1 68414.m00233 60S ribosomal protein L19 (RPL19A) similar
           to ribosomal protein L19 GI:36127 from [Homo sapiens]
          Length = 214

 Score =  195 bits (476), Expect = 2e-50
 Identities = 91/158 (57%), Positives = 110/158 (69%)
 Frame = +3

Query: 33  MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 212
           M SLKLQKRLAASVM+CGK KVWLDPNE ++I+  NSRQNIRK++KDG +I+KP  +HSR
Sbjct: 1   MVSLKLQKRLAASVMKCGKGKVWLDPNESSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 213 ARVRKNTEARRKGRHCGFGKRRGTANARMPXKELWXXXXXXXXXXXXXXXTAXXIDRHLY 392
           +R RK   A+ KGRH G+GKR+GT  AR+P K LW                   ID+H+Y
Sbjct: 61  SRARKMKIAKMKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDKHMY 120

Query: 393 HSLYMXAKGNVFXNKRVLMEYIHRXKADXAXTXMLSDQ 506
           H +YM  KGNVF NKRVLME IH+ KA+ A    LSDQ
Sbjct: 121 HDMYMRVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQ 158


>At4g16030.1 68417.m02432 60S ribosomal protein L19, putative
           similar to 60S ribosomal protein L19-3
           (Swiss-Prot:P49693) [Arabidopsis thaliana]
          Length = 101

 Score = 34.7 bits (76), Expect = 0.046
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = +3

Query: 390 YHSLYMXAKGNVFXNKRVLMEYIHR 464
           YH ++M  KG V+ NK VLME +H+
Sbjct: 37  YHDMFMKVKGKVYKNKCVLMESMHK 61


>At1g59910.1 68414.m06749 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02128
          Length = 929

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +3

Query: 171 DGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTAN 290
           D +  KK + + +  ++RKN + RR+G   G G RR  A+
Sbjct: 77  DVIYWKKLLELENSGKIRKNPKPRRRGDKSGDGFRRTGAD 116


>At5g43060.1 68418.m05256 cysteine proteinase, putative / thiol
           protease, putative similar to cysteine proteinase RD21A
           precursor (thiol protease) GI:435619, SP:P43297 from
           [Arabidopsis thaliana]
          Length = 463

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -1

Query: 193 GFLMTRPSLIILRMFCLELVFAISLISFGSNH 98
           GFL   P +++L M  +     +S+IS+  NH
Sbjct: 2   GFLKLSPMILLLAMIGVSYAMDMSIISYDENH 33


>At5g04710.1 68418.m00480 aspartyl aminopeptidase, putative similar
           to SP|Q9ULA0 Aspartyl aminopeptidase (EC 3.4.11.21)
           {Homo sapiens}; contains Pfam profile PF02127:
           Aminopeptidase I zinc metalloprotease (M18)
          Length = 526

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 109 GSNHTFFLPHRITEAASLFCSLRELI 32
           G+N+ F    R+   AS FC+LR LI
Sbjct: 298 GANNEFIFSGRLDNLASSFCALRALI 323


>At2g32000.1 68415.m03910 DNA topoisomerase family protein similar
           to DNA topoisomerase III beta-1 (EC 5.99.1.2)(SP:Q9Z321)
           {Mus musculus}
          Length = 865

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 171 DGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGT 284
           D L++      H R+ VR+    R +GR  G G RRG+
Sbjct: 816 DELLLSLVEVKHGRSFVRRGGRGRGRGRGRGRGGRRGS 853


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,237,986
Number of Sequences: 28952
Number of extensions: 248351
Number of successful extensions: 572
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1161268208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)