Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P03_F_J08
(651 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0313 - 8866182-8866381,8866470-8866638 33 0.20
06_01_0172 + 1362101-1363708 32 0.46
05_03_0604 - 16132173-16132391,16132488-16132556,16132824-161328... 31 0.60
04_04_0578 + 26353830-26353929,26354030-26354277,26354539-26354931 31 0.80
01_06_0837 - 32328191-32328369,32328682-32328731,32328844-323289... 29 2.4
06_01_1082 - 8847795-8848033,8848511-8848724 29 4.2
12_02_0259 + 16527788-16527842,16528014-16528381 28 7.4
11_06_0221 - 21387365-21387652,21387892-21389952,21390360-21390395 28 7.4
11_06_0204 + 21191611-21192807 28 7.4
07_01_0505 - 3759254-3759490,3759846-3759989,3760135-3760347,376... 28 7.4
02_03_0101 + 15233783-15234601 27 9.8
>02_02_0313 - 8866182-8866381,8866470-8866638
Length = 122
Score = 33.1 bits (72), Expect = 0.20
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = +1
Query: 451 YYVGVCTGW--GATGSWKIEDGAEFDTPDXLXYKFGPVASGSLEFDYRGPHNCHV 609
++VG GW G G W E+G F D L +K+ P+ L+ D+ G C V
Sbjct: 29 WHVGDDKGWTFGVAG-W--ENGKAFKVGDVLVFKYSPMMHNVLQVDHAGYDGCKV 80
>06_01_0172 + 1362101-1363708
Length = 535
Score = 31.9 bits (69), Expect = 0.46
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Frame = +2
Query: 248 LEAGETLRASSGKIXPSPIRLKLKAPEFLTEGNIVVFGFVGIAALSPLDARVKLFHSY-- 421
L + LR ++ +P +L + P L NI++ G VGI LDA +K+
Sbjct: 167 LVSARRLRLAAALFRAAPTKLYI-TPN-LVSCNILLKGLVGIG---DLDAALKVLDEMPG 221
Query: 422 LGLIPNLSQFTTSESAQAGVPQAPGKSKM 508
LG+ P++ +TT SA G G K+
Sbjct: 222 LGITPDVVTYTTVLSAYCGKGDIEGAQKL 250
>05_03_0604 -
16132173-16132391,16132488-16132556,16132824-16132898,
16132981-16133113,16133188-16133297,16133360-16133407,
16133657-16133983,16135006-16135233,16135360-16135689,
16135780-16136586
Length = 781
Score = 31.5 bits (68), Expect = 0.60
Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 11/119 (9%)
Frame = +1
Query: 154 GSVQFKVRAANDAHIALTTGP--------QESDPMYEVMIGGWGNAKSVIRKNXTKPDKV 309
G + F+ A ND + P ++ Y V++G N + I + V
Sbjct: 31 GCITFEASAHNDVTLVFREQPGSQHYHYKMDNSRHYIVILGSHRNKRLKIEVDGKTV--V 88
Query: 310 EIESPGILNGGEYRGFWVRWDSGIIS--AGREGEAIPFISWSDPEP-FPVYYVGVCTGW 477
++ G+ ++ +W+ G+IS GR W DP+P V YVG+ + W
Sbjct: 89 DVAGIGLCCSSSFQSYWISIYDGLISIGQGRHPNNNILFQWLDPDPNRNVQYVGL-SSW 146
>04_04_0578 + 26353830-26353929,26354030-26354277,26354539-26354931
Length = 246
Score = 31.1 bits (67), Expect = 0.80
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = +1
Query: 331 LNGGEYRGFWVRWDSGIISAGREGEAIPFISWSDPEP 441
L G +R WV W +I AG G F+ PEP
Sbjct: 195 LVGWNWRHHWVYWLGPLIGAGMAGALYEFVMAEQPEP 231
>01_06_0837 -
32328191-32328369,32328682-32328731,32328844-32328923,
32329193-32329345,32329505-32329654,32329877-32330000,
32330086-32330198,32330287-32330420,32330566-32331232
Length = 549
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Frame = +1
Query: 319 SPGILNGGEYRGF---WVRWDSGIISAGREGEAIPFISWSDPEPFPVYY 456
SP +L GG Y G W+R I+ G + P + + D P ++Y
Sbjct: 211 SPVVLFGGSYGGMLAAWMRLKYPHIAVGALASSAPILQFEDVVPSTIFY 259
>06_01_1082 - 8847795-8848033,8848511-8848724
Length = 150
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +1
Query: 451 YYVGVCTGWGATGSWKIEDGAEFDTPDXLXYKF 549
YYVG GWG W + G F D L +K+
Sbjct: 44 YYVGDAAGWGRNLDWWLA-GKTFYAGDVLVFKY 75
>12_02_0259 + 16527788-16527842,16528014-16528381
Length = 140
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = -1
Query: 417 EWNSFTLASSGDNAAIPTNPKTTIFPSVKNSGAFNFNLIGLGXIFPDDALSVS 259
E +S +A+ G +A+P PK +F + + L+G G P++ SV+
Sbjct: 68 EVSSVVVAAPGFRSAVPVEPK--LFRRIAGGEEKGYYLVGDGEAIPNNGSSVT 118
>11_06_0221 - 21387365-21387652,21387892-21389952,21390360-21390395
Length = 794
Score = 27.9 bits (59), Expect = 7.4
Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Frame = -2
Query: 428 DQDMNGIASPSRPAEIMPLS-QR----TQKPRYSPPLRIP 324
D+ + SP+ PA P S QR Q PRY PPLR P
Sbjct: 324 DRAASPARSPASPARRGPQSPQRRVSPAQSPRYQPPLRKP 363
>11_06_0204 + 21191611-21192807
Length = 398
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +1
Query: 223 SDPMYEVMIGGWGNAKSVIRKNXTKPDKVEIESPGILNG 339
S +Y G WG+A ++ R++ D V++ PG+ G
Sbjct: 195 SAAIYSSETGAWGDAIALEREHPDPDDAVKVGKPGVQVG 233
>07_01_0505 -
3759254-3759490,3759846-3759989,3760135-3760347,
3760439-3760990,3761339-3761806,3761959-3762023,
3762133-3762265,3763798-3764022
Length = 678
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +1
Query: 442 FPVYYVGVCTGWGATGSWKIEDGAEFDT 525
+P Y G GWG ++ DGAE T
Sbjct: 113 YPAYLYGAYGGWGEYSTYLSHDGAETPT 140
>02_03_0101 + 15233783-15234601
Length = 272
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +2
Query: 323 PEFLTEGNIVVFGFVGIAALSPLDARVKLFHSYLGLIP 436
PE T+G V+ + + + P+ RV+LF Y+ + P
Sbjct: 222 PEHTTDGMPVILESMALVSTPPVAKRVRLFGVYIDVPP 259
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,080,911
Number of Sequences: 37544
Number of extensions: 404835
Number of successful extensions: 1172
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1172
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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