Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_J08
         (651 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27051| Best HMM Match : DUF827 (HMM E-Value=1.8)                    31   0.81 
SB_12804| Best HMM Match : TF_Otx (HMM E-Value=7)                      29   4.3  
SB_57207| Best HMM Match : Transposase_22 (HMM E-Value=0.17)           29   4.3  
SB_25304| Best HMM Match : HDV_ag (HMM E-Value=0.55)                   29   4.3  
SB_7118| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.3  
SB_28276| Best HMM Match : Cerato-platanin (HMM E-Value=6.7)           28   5.7  
SB_45939| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00051)         28   7.6  
SB_2980| Best HMM Match : DUF814 (HMM E-Value=2.10195e-44)             28   7.6  
SB_933| Best HMM Match : ExoD (HMM E-Value=6)                          28   7.6  

>SB_27051| Best HMM Match : DUF827 (HMM E-Value=1.8)
          Length = 283

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 7/76 (9%)
 Frame = +1

Query: 133 NSSPLSSGSVQFKVRAANDAHIALTTGPQESDPMYEVMIG-------GWGNAKSVIRKNX 291
           N SP  SGSV + V  A  +H  L    + + P+Y + +          G    V+R   
Sbjct: 79  NHSP-KSGSVNYFVAPAESSHSQLVLIEELNQPIYSLTLKIIICLSETTGTLPLVLRNAL 137

Query: 292 TKPDKVEIESPGILNG 339
            +P+K    SPG L G
Sbjct: 138 PRPEKYPENSPGTLTG 153


>SB_12804| Best HMM Match : TF_Otx (HMM E-Value=7)
          Length = 245

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/55 (25%), Positives = 24/55 (43%)
 Frame = +2

Query: 359 GFVGIAALSPLDARVKLFHSYLGLIPNLSQFTTSESAQAGVPQAPGKSKMERNSI 523
           G  G   L P+        S  G +P+L Q     S  + +P +PG+  + R ++
Sbjct: 93  GVPGAPTLVPIQRPAPSVPSPTGRVPHLDQIPHVPSGPSSLPSSPGEPLISRGTV 147


>SB_57207| Best HMM Match : Transposase_22 (HMM E-Value=0.17)
          Length = 262

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
 Frame = +2

Query: 425 GLIPNLSQFTTSESAQA-GVPQAPGKSKMERNSILRTXXSISLDLSPLVLWNSITADRTT 601
           G +  L Q++   + +  G+PQ   K   +R  I      I + ++P  +W S     + 
Sbjct: 104 GKLDGLEQYSRRNNIRIDGIPQTEEKEDTDRLIIETIKAKIGIVIAPADIWRSHRVGHSK 163

Query: 602 AMFPSQLI 625
              P Q+I
Sbjct: 164 GSTPRQII 171


>SB_25304| Best HMM Match : HDV_ag (HMM E-Value=0.55)
          Length = 2153

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/28 (39%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = +2

Query: 440 LSQFTTSESAQAGVPQAPGK-SKMERNS 520
           L +FT + +++ G+P  PGK S++ +NS
Sbjct: 448 LQEFTQTHASKGGIPSTPGKTSEVSKNS 475


>SB_7118| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 234

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
 Frame = +1

Query: 211 GPQESDPMYEVMIGGWGNAKSVIRKNXT-KPDKVEIESPGILNGGEY 348
           GP +   +    +G W    S  R   T  P KV +  PGI NG  Y
Sbjct: 84  GPTQDCDVNSGEVGPWKEVPSCSRVGQTGDPSKVRVYGPGIENGLRY 130


>SB_28276| Best HMM Match : Cerato-platanin (HMM E-Value=6.7)
          Length = 225

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +1

Query: 307 VEIESPGILNGGEYRGFWVRWDSGIISAGREGEAIPFISWSDPEPFPV-YYV 459
           + I + GI +  +   FWV + S  +  G     I    W+DP+P  V YY+
Sbjct: 1   LNIATSGITSAEKRMVFWVDFRSANLVLGSGATVIA--QWTDPDPLEVGYYI 50


>SB_45939| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00051)
          Length = 575

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 20/67 (29%), Positives = 34/67 (50%)
 Frame = +1

Query: 238 EVMIGGWGNAKSVIRKNXTKPDKVEIESPGILNGGEYRGFWVRWDSGIISAGREGEAIPF 417
           +  + G  +AKS+   +  +P+K +IES   LN    +       + +I AG + +A P 
Sbjct: 247 QCQLAGTRSAKSIYFGSYYRPNKSDIESLDELNSSLLKMGTTLHKNNVILAG-DFDA-PD 304

Query: 418 ISWSDPE 438
           I W +PE
Sbjct: 305 IDWVNPE 311


>SB_2980| Best HMM Match : DUF814 (HMM E-Value=2.10195e-44)
          Length = 950

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +1

Query: 259 GNAKSVIRKNXTKPDKVEIESPGILNGGEYRGFWVR 366
           GNA  VI      P+ +E E PG L   + R  W R
Sbjct: 784 GNAADVIDGAGAPPEGLEQEEPGPLRTAQSREAWTR 819


>SB_933| Best HMM Match : ExoD (HMM E-Value=6)
          Length = 555

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +2

Query: 299 PIRLKLKAPEFLTEGNIVVFGFVG-IAALSPLDARVKLFHSYLG 427
           P  ++ K P  L +G I+  GF+G ++AL      ++LF    G
Sbjct: 100 PYVIRPKGPRLLRQGTIMKAGFIGLVSALGVYACNLELFRRCAG 143


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,284,042
Number of Sequences: 59808
Number of extensions: 439907
Number of successful extensions: 1123
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1020
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1120
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)