Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_J06
         (584 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomy...   103   3e-23
SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein S23|Schizosac...   103   3e-23
SPAC4F8.06 |||mitochondrial ribosomal protein subunit S12|Schizo...    38   0.001
SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr 1|||Ma...    27   2.7  
SPCC162.05 |coq3||hexaprenyldihydroxybenzoate methyltransferase|...    26   4.7  
SPCC663.02 |wtf14||wtf element Wtf14|Schizosaccharomyces pombe|c...    25   6.2  

>SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 143

 Score =  103 bits (246), Expect = 3e-23
 Identities = 47/57 (82%), Positives = 54/57 (94%)
 Frame = +2

Query: 137 KAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFV 307
           K  +GT +K++PFGG+SHAKGIV+EK+GVEAKQPNSAIRKCVRVQLIKNGKKVTAFV
Sbjct: 29  KRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAKQPNSAIRKCVRVQLIKNGKKVTAFV 85



 Score = 89.4 bits (212), Expect = 3e-19
 Identities = 40/56 (71%), Positives = 46/56 (82%)
 Frame = +3

Query: 309 PXDGCLNHIEXNDEXLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERP 476
           P DGCLN ++ NDE L++GFGRKG A GDIPGVRFKVVKVA V L AL+ EKKE+P
Sbjct: 86  PHDGCLNFVDENDEVLLSGFGRKGKAKGDIPGVRFKVVKVAGVGLSALFHEKKEKP 141


>SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein
           S23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score =  103 bits (246), Expect = 3e-23
 Identities = 47/57 (82%), Positives = 54/57 (94%)
 Frame = +2

Query: 137 KAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFV 307
           K  +GT +K++PFGG+SHAKGIV+EK+GVEAKQPNSAIRKCVRVQLIKNGKKVTAFV
Sbjct: 29  KRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAKQPNSAIRKCVRVQLIKNGKKVTAFV 85



 Score = 89.4 bits (212), Expect = 3e-19
 Identities = 40/56 (71%), Positives = 46/56 (82%)
 Frame = +3

Query: 309 PXDGCLNHIEXNDEXLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERP 476
           P DGCLN ++ NDE L++GFGRKG A GDIPGVRFKVVKVA V L AL+ EKKE+P
Sbjct: 86  PHDGCLNFVDENDEVLLSGFGRKGKAKGDIPGVRFKVVKVAGVGLSALFHEKKEKP 141


>SPAC4F8.06 |||mitochondrial ribosomal protein subunit
           S12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 37.9 bits (84), Expect = 0.001
 Identities = 20/61 (32%), Positives = 33/61 (54%)
 Frame = +2

Query: 125 KNSTKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAF 304
           +N  K    T  ++    G+   +G+      V+ K+PNSA+RK  RV+L   G+ VTA+
Sbjct: 29  RNKEKRPEKTNKQSVALEGSPFRRGVCTRVFTVKPKKPNSAVRKVARVRL-STGRSVTAY 87

Query: 305 V 307
           +
Sbjct: 88  I 88


>SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 835

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -3

Query: 147 MWAFVEFFVRPSLFTSGGSRAYAPFVLPAG 58
           +W F +F  RPS+   GG  A A    P G
Sbjct: 705 LWDFADFGARPSMVLKGGMIALASMGDPNG 734


>SPCC162.05 |coq3||hexaprenyldihydroxybenzoate
           methyltransferase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 271

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 3   LFSHSRSRLGVVLSNTG*TPQAIRTARKHVN 95
           + S S +RLG  ++    +P AI  A+KH +
Sbjct: 90  ILSESMARLGASVTAVDASPMAIEVAKKHAS 120


>SPCC663.02 |wtf14||wtf element Wtf14|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 222

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 115 IAVHERWFTCLRAVRIACG 59
           +A +E WF  ++ V +ACG
Sbjct: 118 LATYETWFRSIKEVIVACG 136


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,491,878
Number of Sequences: 5004
Number of extensions: 50659
Number of successful extensions: 114
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)